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Results for “somatic-variants

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Showing 1-12 of 12 ranked candidates matching "somatic-variants"

Best blend of relevance, quality, freshness, and verified outcomes

1

Deepsomatic

PROMISING · 66TRUST · 76SAFE · REVIEWEDDATA

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

$ npx skills add google/deepsomatic
311 stars44 quality76 trustReviewed with permission notes6mo since pushNeeds review

Scenario Browser automation

CLI + Codex · 4 targets

bioinformatics
by googleDetailsQuick view
2

VariantSpark

PROMISING · 62TRUST · 73SAFE · REVIEWEDDATA

machine learning for genomic variants

$ npx skills add aehrc/VariantSpark
147 stars46 quality73 trustReviewed with permission notes2mo since pushNeeds review

Scenario Data analysis

CLI + Codex · 4 targets

javascriptnotebook
by aehrcDetailsQuick view
3

Semgrep

VERIFIEDEXCELLENT · 100TRUST · 90SAFE · REVIEWEDCODING

Lightweight static analysis for many languages. Find bug variants with patterns that look like source code.

$ npx skills add semgrep/semgrep
15.6K stars70 quality90 trustReviewed2mo since pushSafe to try

Scenario Coding agents

CLI + Codex · 4 targets

ocamlstatic-analysis
by semgrepDetailsQuick view
4

Deepvariant

VERIFIEDEXCELLENT · 91TRUST · 85SAFE · REVIEWEDDESIGN

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

$ npx skills add google/deepvariant
3.7K stars60 quality85 trustReviewed5mo since pushSafe to try

Scenario Multimodal media

CLI + Codex · 4 targets

pythonmachine-learning
by googleDetailsQuick view
5

Sarek

STRONG · 73TRUST · 81SAFE · REVIEWEDCODING

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

$ npx skills add nf-core/sarek
574 stars50 quality81 trustReviewed2mo since pushSafe to try

Scenario GitHub automation

CLI + Codex · 4 targets

nextflowbioinformatics
by nf-coreDetailsQuick view
6

Fakecloud

STRONG · 71TRUST · 75SAFE · EXPERIMENTALCODING

Free, open-source AWS emulator. LocalStack alternative: 41 services, 3,704 operations, true 100% Smithy conformance (124,255/124,255 variants pass). No account, no auth…

$ npx skills add faiscadev/fakecloud
419 stars49 quality75 trustExperimental2mo since pushNeeds review

Scenario Testing and QA

CLI + Codex · 4 targets

rustterraform
by faiscadevDetailsQuick view
7

Taichi Nerfs

NEEDS REVIEW · 49TRUST · 70SAFE · EXPERIMENTALCODING

Implementations of NeRF variants based on Taichi + PyTorch

$ npx skills add taichi-dev/taichi-nerfs
828 stars39 quality70 trustExperimental2y since pushNeeds review

Scenario Coding agents

CLI + Codex · 4 targets

pythoncomputer-vision
by taichi-devDetailsQuick view
8

Hgvs

STRONG · 70TRUST · 78SAFE · REVIEWEDCODING

Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).

$ npx skills add biocommons/hgvs
291 stars48 quality78 trustReviewed with permission notes2mo since pushNeeds review

Scenario GitHub automation

CLI + Codex · 4 targets

pythonbioinformatics
by biocommonsDetailsQuick view
9

Ribbon

NEEDS REVIEW · 45TRUST · 69SAFE · EXPERIMENTALCODING

A genome browser designed for complex structural variants and long reads.

$ npx skills add MariaNattestad/Ribbon
302 stars36 quality69 trustExperimentalBrowser agents1y since pushNeeds review

Scenario GitHub automation

Browser agents + CLI · 4 targets

javascriptbioinformatics
by MariaNattestadDetailsQuick view
10

Skill Eval Harness

PROMISING · 68TRUST · 75SAFE · REVIEWEDAUTOMATION

Agent Skill evaluation harness for paired variants, trace artifacts, and runner adapters

$ npx skills add adewale/skill-eval-harness
63 stars45 quality75 trustReviewed with permission notesClaude Code21d since pushNeeds review

Scenario Automation

Claude Code + CLI · 4 targets

python
by adewaleDetailsQuick view
11

Code Snippet Editor Plugin

NEEDS REVIEW · 42TRUST · 72SAFE · EXPERIMENTALDESIGN

Translate component variants, properties, and more into dynamic code snippets for your design system.

$ npx skills add figma/code-snippet-editor-plugin
169 stars34 quality72 trustExperimental2y since pushNeeds review

Scenario Design and creative

CLI + Codex · 4 targets

typescriptfigma
by figmaDetailsQuick view
12

ai-assist-prototype

PROMISING · 61TRUST · 60SAFE · EXPERIMENTALDESIGN

Build self-contained, double-click-to-open HTML prototypes so the user can vet an interface before it gets built. One file holds several structurally different variants…

$ npx skills add jparkerweb/ai-assist-skills --skill ai-assist-prototype
88 stars36 quality60 trustExperimentalClaude Code + Browser agents1d since pushNeeds review

Scenario Design and creative

Claude Code + Browser agents · 4 targets

by jparkerwebDetailsQuick view