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Results for “scrna-seq”

Exact name and slug matches are checked against the live registry before ranked alternatives.

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Choose by scenario, quality, and trust signals.

Use casePlatform fitQuality tierTrust profileSafety gateGitHub adoption

Showing 1-9 of 9 ranked candidates matching "scrna-seq"

Best blend of relevance, quality, freshness, and verified outcomes

PyDESeq2

STRONG · 74TRUST · 79SAFE · REVIEWEDCODING

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

$ npx skills add scverse/PyDESeq2

753 stars51 quality79 trustReviewed with permission notes2mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by scverseDetailsQuick view

Omicverse

VERIFIEDEXCELLENT · 89TRUST · 87SAFE · REVIEWEDCODING

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

$ npx skills add omicverse/omicverse

1.0K stars60 quality87 trustReviewed2mo since pushSafe to try

QualityHigh-confidence pick with strong adoption and healthy maintenance signals.

TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…Review: Documentation summary is thin

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by omicverseDetailsQuick view

MLLMCelltype

STRONG · 73TRUST · 79SAFE · REVIEWEDCODING

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

$ npx skills add cafferychen777/mLLMCelltype

646 stars50 quality79 trustReviewed with permission notes2mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by cafferychen777DetailsQuick view

Salmon

STRONG · 75TRUST · 81SAFE · REVIEWEDCODING

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

$ npx skills add COMBINE-lab/salmon

893 stars51 quality81 trustReviewed2mo since pushSafe to try

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

rustbioinformatics

by COMBINE-labDetailsQuick view

Single Cell Pseudotime

STRONG · 78TRUST · 78SAFE · REVIEWEDCODING

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

$ npx skills add agitter/single-cell-pseudotime

444 stars52 quality78 trustReviewed25d since pushSafe to try

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

bioinformatics

by agitterDetailsQuick view

arboreto

EXCELLENT · 92TRUST · 85SAFE · REVIEWEDCODING

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, sin…

$ npx skills add K-Dense-AI/scientific-agent-skills --skill arboreto

34.0K stars55 quality85 trustReviewedClaude Code2d since pushSafe to try

QualityHigh-confidence pick with strong adoption and healthy maintenance signals.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

Claude Code + CLI · 4 targets

by K-Dense-AIDetailsQuick view

Rapids Singlecell

STRONG · 71TRUST · 76SAFE · REVIEWEDCODING

rapids-singlecell: GPU-accelerated framework for scRNA analysis

$ npx skills add scverse/rapids-singlecell

377 stars49 quality76 trustReviewed with permission notes2mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by scverseDetailsQuick view

SciAgent Skills

PROMISING · 63TRUST · 75SAFE · REVIEWEDCODING

197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers Omic…

$ npx skills add jaechang-hits/SciAgent-Skills

208 stars47 quality75 trustReviewed with permission notesClaude Code2mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: License is unclear

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario Coding agents · I need a coding agent that can understand a repository, edit code, and review pull requests.

Claude Code + CLI · 4 targets

pythonscientific-computing

by jaechang-hitsDetailsQuick view

CyteType

PROMISING · 57TRUST · 72SAFE · REVIEWEDCODING

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

$ npx skills add NygenAnalytics/CyteType

132 stars42 quality72 trustReviewed with permission notes4mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: License is unclear

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario Database and SQL · I need my agent to inspect database schemas, write SQL, and explain query results.

CLI + Codex · 4 targets

pythonllm

by NygenAnalyticsDetailsQuick view

Live registry search

Results for “scrna-seq”

Exact name and slug matches are checked against the live registry before ranked alternatives.

Clear search

Decision filters

Choose by scenario, quality, and trust signals.

Use casePlatform fitQuality tierTrust profileSafety gateGitHub adoption

Showing 1-9 of 9 ranked candidates matching "scrna-seq"

Best blend of relevance, quality, freshness, and verified outcomes

PyDESeq2

STRONG · 74TRUST · 79SAFE · REVIEWEDCODING

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

$ npx skills add scverse/PyDESeq2

753 stars51 quality79 trustReviewed with permission notes2mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by scverseDetailsQuick view

Omicverse

VERIFIEDEXCELLENT · 89TRUST · 87SAFE · REVIEWEDCODING

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

$ npx skills add omicverse/omicverse

1.0K stars60 quality87 trustReviewed2mo since pushSafe to try

QualityHigh-confidence pick with strong adoption and healthy maintenance signals.

TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…Review: Documentation summary is thin

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by omicverseDetailsQuick view

MLLMCelltype

STRONG · 73TRUST · 79SAFE · REVIEWEDCODING

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

$ npx skills add cafferychen777/mLLMCelltype

646 stars50 quality79 trustReviewed with permission notes2mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by cafferychen777DetailsQuick view

Salmon

STRONG · 75TRUST · 81SAFE · REVIEWEDCODING

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

$ npx skills add COMBINE-lab/salmon

893 stars51 quality81 trustReviewed2mo since pushSafe to try

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

rustbioinformatics

by COMBINE-labDetailsQuick view

Single Cell Pseudotime

STRONG · 78TRUST · 78SAFE · REVIEWEDCODING

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

$ npx skills add agitter/single-cell-pseudotime

444 stars52 quality78 trustReviewed25d since pushSafe to try

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

bioinformatics

by agitterDetailsQuick view

arboreto

EXCELLENT · 92TRUST · 85SAFE · REVIEWEDCODING

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, sin…

$ npx skills add K-Dense-AI/scientific-agent-skills --skill arboreto

34.0K stars55 quality85 trustReviewedClaude Code2d since pushSafe to try

QualityHigh-confidence pick with strong adoption and healthy maintenance signals.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

Claude Code + CLI · 4 targets

by K-Dense-AIDetailsQuick view

Rapids Singlecell

STRONG · 71TRUST · 76SAFE · REVIEWEDCODING

rapids-singlecell: GPU-accelerated framework for scRNA analysis

$ npx skills add scverse/rapids-singlecell

377 stars49 quality76 trustReviewed with permission notes2mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by scverseDetailsQuick view

SciAgent Skills

PROMISING · 63TRUST · 75SAFE · REVIEWEDCODING

197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers Omic…

$ npx skills add jaechang-hits/SciAgent-Skills

208 stars47 quality75 trustReviewed with permission notesClaude Code2mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: License is unclear

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario Coding agents · I need a coding agent that can understand a repository, edit code, and review pull requests.

Claude Code + CLI · 4 targets

pythonscientific-computing

by jaechang-hitsDetailsQuick view

CyteType

PROMISING · 57TRUST · 72SAFE · REVIEWEDCODING

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

$ npx skills add NygenAnalytics/CyteType

132 stars42 quality72 trustReviewed with permission notes4mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: License is unclear

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario Database and SQL · I need my agent to inspect database schemas, write SQL, and explain query results.

CLI + Codex · 4 targets

pythonllm

by NygenAnalyticsDetailsQuick view

AI Agent Skills Directory

Results for “scrna-seq”

Choose by scenario, quality, and trust signals.

PyDESeq2

Omicverse

MLLMCelltype

Salmon

Single Cell Pseudotime

arboreto

Rapids Singlecell

SciAgent Skills

CyteType

AI Agent Skills Directory

Results for “scrna-seq”

Choose by scenario, quality, and trust signals.

PyDESeq2

Omicverse

MLLMCelltype

Salmon

Single Cell Pseudotime

arboreto

Rapids Singlecell

SciAgent Skills

CyteType

AI Agent Skills Directory

Results for “scrna-seq”

Choose by scenario, quality, and trust signals.

PyDESeq2

Omicverse

MLLMCelltype

Salmon

Single Cell Pseudotime

arboreto

Rapids Singlecell

SciAgent Skills

CyteType