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A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
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A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
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A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
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An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
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rapids-singlecell: GPU-accelerated framework for scRNA analysis
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197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers Omic…
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Predict genome-wide functional genomics tracks from DNA sequence with Borzoi (Linder 2025) — a sequence-to-function model outputting RNA-seq, CAGE, ATAC, and ChIP covera…