AI Agent Skills

Single-cell analysis in Python. Scales to >100M cells.

Annotated data.

rapids-singlecell: GPU-accelerated framework for scRNA analysis

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Spatial Single Cell Analysis in Python

CellRank: dynamics from multi-view single-cell data

Build, slice, concatenate, read, and write AnnData annotated data matrices (obs, var, X, layers, obsm, uns) — the scverse data STRUCTURE, not an analysis pipeline. Use w…