AI Agent Skills

Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.

~95% on SimpleQA (e.g. Qwen3.6-27B on a 3090). Supports all local and cloud LLMs (llama.cpp, Ollama, Google, ...). 10+ search engines - arXiv, PubMed, your private docum…

Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and gener…

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez)…

Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when c…

Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public r

Semantic Similarity Index for disease research literature using PubMedBERT embeddings

Benchmark LLM reference recommendation capabilities by verifying every cited paper against Crossref, PubMed, arXiv, and DBLP. Measures hallucination rate, per-field accu…

Academic research skills suite for Claude Code — literature search (arXiv+PubMed+WoS), PDF extraction, figure cropping, review writing, Zotero sync, and PPT generation.

An agentic AI application that allows you to chat with your papers and gather also information from papers on ArXiv and on PubMed

Manipulate biological sequences, parse FASTA/GenBank/PDB files, run phylogenetics, and access NCBI/PubMed programmatically via Biopython (Bio.SeqIO, Bio.Entrez, Bio.PDB,…

Find, inspect, compare, and traverse public biomedical research literature. Use for PubMed or scholarly paper search, publication details, PMID/DOI/PMCID lookup, related…