AI Agent Skills

A list of ICs and IPs for AI, Machine Learning and Deep Learning.

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCoun…

Array of MCU's driver SDKs prepared for effortless remote management of the MCU's peripherals

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, sin…

Unified biological database evidence owner. Use for gene annotation, variant clinical significance, cancer mutation evidence, GWAS trait associations, pathway mapping, t…

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

CLI to support with downloading and compiling terraform providers for Mac with M1 chip

EDA-Q is a full-stack electronic design automation (EDA) tool for quantum chip design, supporting both superconducting and trapped-ion quantum computing architectures. T…

Predict genome-wide functional genomics tracks from DNA sequence with Borzoi (Linder 2025) — a sequence-to-function model outputting RNA-seq, CAGE, ATAC, and ChIP covera…

Master AI inference, AI agent harness systems, and hardware engineering — then design a physical AI chip. That is the goal.

197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers Omic…

omics-plotting: publication-style figure authoring for omics / bioinformatics results with matplotlib / seaborn. Read this before writing any plotting or figure code in…