AI Agent Skills

🗺️ Hermes Atlas — the community map of every tool, skill, and integration for Hermes Agent by Nous Research. Live at hermesatlas.com

Python library to facilitate genome assembly, annotation, and comparative genomics

Genome assembly evaluation tool

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Ultra-fast and memory-efficient (meta-)genome assembler

Connect to MongoDB and Atlas and directly from your VS Code environment, navigate your databases and collections, inspect your schema and use playgrounds to prototype qu…

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

:pencil2: A versatile DNA sequence optimizer

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

A genome browser designed for complex structural variants and long reads.

BCI: Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix

Turn one topic into a finished Vox-style paper-collage explainer/ad video — automated end to end on Atlas Cloud + ffmpeg. An agent skill.

Generate, reconstruct, inspect, and route production 3D assets for OpenMontage worlds using Atlas Cloud, fal.ai, licensed catalogs, and Blender.

Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene…

Use when assessing AI/ML systems for prompt injection, jailbreak vulnerabilities, model inversion risk, data poisoning exposure, or agent tool abuse. Covers MITRE ATLAS…

Screen a genotype set (array or WGS-derived) against OMIM-morbid, ACMG-SF and Hereditary-Cancer gene panels and prioritise carried variants by ClinVar significance, gnom…