AI Agent Skills

Scripts to download genomes from the NCBI FTP servers

GenomeTools genome analysis system.

A genome visualization python package for comparative genomics

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

:pencil2: A versatile DNA sequence optimizer

Python library to facilitate genome assembly, annotation, and comparative genomics

Genome assembly evaluation tool

Ultra-fast and memory-efficient (meta-)genome assembler

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

A genome browser designed for complex structural variants and long reads.

Screen a genotype set (array or WGS-derived) against OMIM-morbid, ACMG-SF and Hereditary-Cancer gene panels and prioritise carried variants by ClinVar significance, gnom…

Detect Neanderthal and Denisovan introgression segments from modern human genomes

Genome, transcriptome, and protein completeness assessment via BUSCO v6. Agentic lineage routing from organism description, all three BUSCO modes, auto-lineage

Ancestry decomposition PCA against the Simons Genome Diversity Project

Inference of ploidy and heterozygosity structure using whole genome sequencing data