Scripts to download genomes from the NCBI FTP servers

Genome assembly evaluation tool

A genome visualization python package for comparative genomics

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Source code for JBrowse 2, a modern React-based genome browser

Python library to facilitate genome assembly, annotation, and comparative genomics

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.

Ultra-fast and memory-efficient (meta-)genome assembler

:scissors: :zap: Rapid haploid variant calling and core genome alignment

Rapid large-scale prokaryote pan genome analysis

GenomeTools genome analysis system.