bulk-rnaseq
K-Dense-AI
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCoun…
DesignClaude Code
38.5KGitHub
OPENAGENTSKILL / DIRECTORY
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Results · “bulk-rna-seq”
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Results: 34
Omicverse
omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Geo ScienceReview before use
1KGitHub
PyDESeq2
scverse
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Geo ScienceReview before use
753GitHub
EFCore.BulkExtensions
borisdj
Entity Framework EF Core efcore Bulk Batch Extensions with BulkCopy in .Net for Insert Update Delete Read (CRUD), Truncate and SaveChanges operations on SQL Server, Post…
DataReview before use
4KGitHub
PhenX.EntityFrameworkCore.BulkInsert
PhenX
Super fast bulk insertion for Entity Framework Core on SQL Server, PostgreSQL, Sqlite, MySQL and Oracle
DataReview before use
143GitHub
Salmon
COMBINE-lab
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Geo ScienceReview before use
893GitHub
Single Cell Pseudotime
agitter
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Geo ScienceReview before use
444GitHub
MLLMCelltype
cafferychen777
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
Geo ScienceReview before use
646GitHub
arboreto
K-Dense-AI
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, sin…
DataClaude Code
34KGitHub
Moondownloader
LeyckerS
Lightning-fast bulk file downloader for datanodes.to & fuckingfast.co - 253 MB/s on 2.5 Gbps fiber. Playwright extraction + aiohttp async engine.
933GitHub
Dapper Plus
zzzprojects
Dapper Plus - High-Efficient Bulk Actions (Insert, Update, Delete, and Merge) for .NET
DataReview before use
429GitHub
Apple Notes Exporter
kzaremski
MacOS app written in Swift that bulk exports Apple Notes (including iCloud Notes) to a multitude of formats preserving note folder structure.
DataReview before use
584GitHub
bio-database-evidence
foryourhealth111-pixel
Unified biological database evidence owner. Use for gene annotation, variant clinical significance, cancer mutation evidence, GWAS trait associations, pathway mapping, t…
DesignClaude Code
3.1KGitHub
AnyCrawl
any4ai
AnyCrawl 🚀: A Node.js/TypeScript crawler that turns websites into LLM-ready data and extracts structured SERP results from Google/Bing/Baidu/etc. Native multi-threading…
DataReview before use
3.4KGitHub
Dataset
pudo
Easy-to-use data handling for SQL data stores with support for implicit table creation, bulk loading, and transactions.
DataReview before use
4.9KGitHub
browser-act-skill-forge
browser-act
Forges reusable Skill packages (SKILL.md + scripts) from website exploration via browser-act — no re-exploration later. Use when: user wants a reusable Skill for any web…
5.8KGitHub
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