Pysam
pysam-developers
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the…
Geo ScienceSkill source unconfirmed
895GitHub
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Results: 133
Single Cell Pseudotime
agitter
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Geo ScienceSkill source unconfirmed
444GitHub
Sourmash
sourmash-bio
Quickly search, compare, and analyze genomic and metagenomic data sets.
Geo ScienceSkill source unconfirmed
547GitHub
Signac
stuart-lab
R toolkit for the analysis of single-cell chromatin data
Geo ScienceSkill source unconfirmed
419GitHub
Mixcr
milaboratory
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Geo ScienceSkill source unconfirmed
393GitHub
Mobile
MerginMaps
Mergin Maps mobile app 📲 Open QGIS projects and manage vector data on your phone, even offline 📶 (Android/iOS/Windows app)
Geo ScienceSkill source unconfirmed
381GitHub
Pysradb
saketkc
Package for fetching metadata and downloading data from SRA/ENA/GEO
Geo ScienceSkill source unconfirmed
364GitHub
Lidar
opengeos
A Python package for delineating nested surface depressions from digital elevation data.
Geo ScienceSkill source unconfirmed
298GitHub
Smudgeplot
KamilSJaron
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Geo ScienceSkill source unconfirmed
295GitHub
Gdal3.Js
bugra9
Convert raster and vector geospatial data to various formats and coordinate systems entirely in the browser.
427GitHub
HyperCoast
opengeos
A Python Package for Visualizing and Analyzing Hyperspectral Data in Coastal Environments
Geo ScienceSkill source unconfirmed
275GitHub
Dada2
benjjneb
Accurate sample inference from amplicon data with single nucleotide resolution
Geo ScienceSkill source unconfirmed
552GitHub
DeepTools
deeptools
Tools to process and analyze deep sequencing data.
Geo ScienceSkill source unconfirmed
761GitHub
Nextgisweb
nextgis
NextGIS Web is an open-source Web GIS server for geospatial data management, web map publishing, and QGIS-centered collaborative workflows.
Geo ScienceSkill source unconfirmed
258GitHub
GLUE
gao-lab
Graph-linked unified embedding for single-cell multi-omics data integration
Geo ScienceSkill source unconfirmed
467GitHub
Geoserver Rest
gicait
Python library for management of geospatial data in GeoServer.
Geo ScienceSkill source unconfirmed
225GitHub