Sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
Supply asset profile
Coding and developer agents
Code review, repo analysis, testing, CI, GitHub, DevOps, and developer workflow skills.
Scenario
GitHub automation
I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.
Agent fit
Claude Code + CLI + Codex
Codex, Claude Code, Cursor, CLI, or custom agents.
Install
Ready
npx skills add sourmash-bio/sourmash
Maintenance
fresh
1d since push
Risk
Safe to try
License is unclear
GitHub quality
547
80/100 quality · 82/100 trust
Coverage tags
Review notes
License is unclear · Quality score needs review
Agent adoption scorecard
Trust, audit, and install readiness at a glance
These scores combine public repository metadata, OpenAgentSkill review signals, maintenance freshness, and install readiness. They are a shortlist signal, not a replacement for human review.
Quality
StrongSolid option that is likely worth shortlisting for production workflows.
Trust
Strong shortlistGood trust signals with a few areas worth checking before rollout.
Audit
Safe to tryInstall readiness, security metadata, maintenance, and adoption risk.
Trust Score v3
Human review before install
Test in a sandbox workflow and compare its install path with close alternatives.
Stars
547 GitHub stars
Repo activity
547 stars, 93 forks
Maintenance
1d since push
License
Unknown
Install
npx skills add sourmash-bio/sourmash
Install safety
standard package or runtime install path
Permission surface
filesystem or document access
Docs
Usable metadata, review docs
Risk summary
Review before production
- License is unclear
- Quality score needs review
- License clarity: Unknown
Install readiness
Install path available
- Install path is available
- Repository evidence is available
- License is unclear
- 1d since push
Agent-readable metadata
Machine-readable decision data for this skill.
Use this block or the embedded JSON to decide whether an agent should install this skill, choose an alternative, or ask for human review first.
Suited tasks
- RAG and knowledge workflows
- Claude Code teams
- teams that value GitHub adoption signals
- Chunk documents
- Create embeddings
Suited agents
Trust and risk
- Trust score
- 82/100
- Risk level
- Safe to try
- Auto install
- review
Do not use when
- teams that need a vendor-supported SLA
- high-compliance environments without internal security review
- No OpenAgentSkill engagement data yet
- License is unclear
- Quality score needs review
Agent safety v2
69/100 · Review before install
Good audit and safety signals with no high-risk permission hints in public metadata.
Review the audit page, then allow agent install in a sandboxed workflow.
medium
Network access
Skill likely fetches remote pages, APIs, repositories, or external services.
medium
Filesystem access
Skill may read or write project files, documents, generated artifacts, or local workspace state.
- License is unclear
Install targets
Install this skill in your agent workflow
Copy the registry command or an agent-specific install prompt for Codex, Claude Code, and Cursor.
OpenAgentSkill CLI
Use the registry command when your workflow supports the OpenAgentSkill installer.
$ npx skills add sourmash-bio/sourmashAgent resolve plan
Let an agent verify fit before installing.
The Resolve API returns the selected skill, alternatives, safety policy, audit notes, install target, and copy-paste prompt an agent can follow without scraping this page.
Resolve JSON
/api/agent/resolve?task=Use%20Sourmash%20for%20an%20agent%20workflow&agent=codex&max_risk=medium
Resolve text
/api/agent/resolve?task=Use%20Sourmash%20for%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text
Install handoff
/api/skills/sourmash-bio-sourmash/install
Agent should check
- Task fit and alternatives from Resolve API.
- Audit score, trust score, and safety policy warnings.
- Install target compatibility for Codex, Claude Code, Cursor, or CLI.
Copy prompt
Task: Use Sourmash in this workspace.
Resolve first: https://www.openagentskill.com/api/agent/resolve?task=Use%20Sourmash%20for%20an%20agent%20workflow&agent=codex&max_risk=medium
Review install handoff: https://www.openagentskill.com/api/skills/sourmash-bio-sourmash/install
Install command: npx skills add sourmash-bio/sourmash
Before running it, summarize audit warnings, required permissions, and the fallback skill if install is risky.Agent handoff
Give an agent the install path, not another directory page.
Use the public install endpoint to fetch the command, safety checklist, target prompts, and canonical links for this skill.
Install handoff
/api/skills/sourmash-bio-sourmash/install
LLM text format
/api/skills/sourmash-bio-sourmash/install?format=text
Find alternatives
/api/skills/search?q=Sourmash&limit=3
Agent prompt
Use Sourmash for this task. Review https://www.openagentskill.com/api/skills/sourmash-bio-sourmash/install, then install with: npx skills add sourmash-bio/sourmashRegistry metadata
Agent-readable profile for automatic skill selection.
This page exposes the same decision, trust, audit, use-case, and install signals through the Registry API, so agents can rank this skill without scraping the UI.
Manifest
/api/registry/manifest/sourmash-bio-sourmash
LLM text
/api/registry/manifest/sourmash-bio-sourmash?format=text
Install alias
/api/registry/install/sourmash-bio-sourmash
Recommend
/api/registry/recommend?task=Use%20Sourmash%20in%20an%20agent%20workflow&limit=3
Agent fit
RAG and knowledge
Use-case tags
Platforms
Python, Bioinformatics, Claude Code
Audit report
Safe to try · 85/100
Review install readiness, maintenance, trust, quality, and metadata warnings before adding this skill to an agent workflow.
Agent decision cockpit
Primary pick for RAG and knowledge
Use this as a leading candidate, then validate the README and install path in your own agent stack.
Role in stack
Primary pick
Primary fit
RAG and knowledge
Trust label
Production-ready
Install path
Command ready
Use when
- RAG and knowledge workflows
- Claude Code teams
- teams that value GitHub adoption signals
Evidence
- 547 GitHub stars
- recent repository activity
- install command or GitHub repo available
- 80/100 quality profile
Review first
- No OpenAgentSkill engagement data yet
Implementation path
- 1Install it in a sandbox agent and run one RAG and knowledge task end to end.
- 2Compare output quality, latency, and failure behavior against at least one alternative.
- 3Promote it into production only after reviewing repository permissions, license, and maintenance signals.
Trust profile
Strong shortlist
Good trust signals with a few areas worth checking before rollout.
GitHub adoption
INFO547 GitHub stars
Stars/forks activity
INFO547 stars, 93 forks; issue activity unavailable in current metadata
Recent maintenance
PASS1d since push
License clarity
CHECKUnknown
Good signals
- AI review approved
- Install path is available
- Repository evidence is available
- Recently maintained repository
- Meaningful GitHub adoption signal
- Install command has no obvious high-risk pattern
Review before install
- License is unclear
- Quality score needs review
- License clarity: Unknown
Recommended action
Test in a sandbox workflow and compare its install path with close alternatives.
Quality profile
Strong candidate for agent workflows
Solid option that is likely worth shortlisting for production workflows.
Workflow fit
Use this skill in these scenarios
Search private knowledge
RAG and knowledge
I need my agent to build a RAG workflow over documents and retrieve reliable context.
Operate web apps
Browser automation
I need my agent to control a browser, fill forms, and verify web app workflows.
Investigate faster
Research agents
I need my agent to research a topic, compare sources, and produce a concise report.
Stack fit
Add it to a complete workflow
Ingest, retrieve, and cite
RAG knowledge base
A stack for document-heavy agents that ingest files, create searchable knowledge, retrieve relevant context, and answer with grounded sources.
Operate and verify web apps
Browser QA agent
A stack for agents that navigate products, fill forms, take screenshots, and verify real user flows across web applications.
Find, compare, and synthesize
Research report agent
A stack for agents that gather sources, compare claims, summarize long material, and draft useful research briefs.
Alternative shortlist
Compare before you install
Similar skills in this category, ranked with the same readiness and quality signals.
Erpnext
Free and Open Source Enterprise Resource Planning (ERP)
Biopython
Official git repository for Biopython (originally converted from CVS)
Nextflow
A DSL for data-driven computational pipelines
ColabFold
Making Protein folding accessible to all!
Overview
Quickly search, compare, and analyze genomic and metagenomic data sets.
Imported by the skill-only GitHub discovery pipeline because it matches agent skill, automation, domain workflow, RAG, document-processing, data, finance, security, or developer-tool signals. Protocol-server projects are excluded from automated imports.
Platform Compatibility
Technical Details
- Version
- 1.0.0
- License
- Unknown
- Last Updated
- 6/16/2026
- Published
- 6/16/2026
Frameworks & Tools
Decision snapshot
Primary pick
547 GitHub stars
Audit Snapshot
Install and adoption review
- Security
- 81/100
- Maintenance
- 100/100
- Install
- 92/100
Growth loop
Share this skill
Scenario-led draft for Sourmash, with the OpenAgentSkill Update theme and canonical URL.
OpenAgentSkill Update Today: Sourmash Use it when your agent needs to turn docs, data, or knowledge bases into answers and actions. 547 stars - geo-science Link: https://www.openagentskill.com/skills/sourmash-bio-sourmash?ref=x #AIAgents #OpenAgentSkill
Optional reply with install command
Link for Sourmash: https://www.openagentskill.com/skills/sourmash-bio-sourmash?ref=x Install: npx skills add sourmash-bio/sourmash
Listing source
Community indexed
This listing was indexed from public sources and is not marked official until a maintainer claim is approved.
- Creator
- sourmash-bio
- Source
- sourmash-bio/sourmash
- Indexed by
- OpenAgentSkill community index
Attribution links to the public repository or creator profile. Creators can claim the listing to update ownership signals.
Claim this skillOwner claim
Claim this skill listing
This community indexed listing is attributed to sourmash-bio but is not marked official yet. Claim it to add a verified owner signal and make future launch, install, and audit updates easier to trust.
README badge
Add this badge to your GitHub README to show the listing, trust score, and install handoff.
[](https://www.openagentskill.com/skills/sourmash-bio-sourmash)Author
sourmash-bio
@sourmash-bio
Platform Fit
Health Signals
- GitHub stars
- 547
- Quality score
- 53/100
- Last GitHub push
- Jun 15, 2026
- Framework hints
- 2
- OpenAgentSkill views
- 0
- Install copies
- 0
- Outbound clicks
- 0
Community Signal
Share whether this skill looks useful for your agent workflow. Aggregated feedback improves rankings over time.
Trust & Safety
Strong shortlist
- GitHub adoption547 GitHub starsINFO
- Stars/forks activity547 stars, 93 forks; issue activity unavailable in current metadataINFO
- Recent maintenance1d since pushPASS
- License clarityUnknownCHECK
- README/SKILL.md completenessPublic metadata needs stronger README/SKILL.md contextINFO
- Dependency/runtime riskno major dependency risk hints in public metadataPASS
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