Scikit Bio
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Geo ScienceSkill source unconfirmed
1.2KGitHub
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Candidates in this shortlist, not the full registry. GitHub stars belong to repositories, not individual skills.
Results: 134
Whitebox Tools
jblindsay
An advanced geospatial data analysis platform
Geo ScienceSkill source unconfirmed
1.2KGitHub
Geoparquet
opengeospatial
Specification for storing geospatial vector data (point, line, polygon) in Parquet
Geo ScienceSkill source unconfirmed
1.1KGitHub
Placemark
placemark
A flexible web-based editor, converter, visualization tool, for geospatial data
Geo ScienceSkill source unconfirmed
1.4KGitHub
Htslib
samtools
C library for high-throughput sequencing data formats
Geo ScienceSkill source unconfirmed
926GitHub
Openglobus
openglobus
TypeScript/JavaScript 3D maps and geospatial data visualization engine library
Geo ScienceSkill source unconfirmed
912GitHub
Pysam
pysam-developers
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the…
Geo ScienceSkill source unconfirmed
895GitHub
Single Cell Pseudotime
agitter
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Geo ScienceSkill source unconfirmed
444GitHub
Cobrapy
opencobra
COBRApy is a package for constraint-based modeling of metabolic networks.
Geo ScienceSkill source unconfirmed
568GitHub
Sourmash
sourmash-bio
Quickly search, compare, and analyze genomic and metagenomic data sets.
Geo ScienceSkill source unconfirmed
547GitHub
Anvio
merenlab
An analysis and visualization platform for 'omics data
Geo ScienceSkill source unconfirmed
526GitHub
Geojs
OpenGeoscience
High-performance visualization and interactive data exploration of scientific and geospatial location aware datasets
Geo ScienceSkill source unconfirmed
468GitHub
Geospatial
opengeos
A Python package for installing commonly used packages for geospatial analysis and data visualization with only one command.
Geo ScienceSkill source unconfirmed
422GitHub
Signac
stuart-lab
R toolkit for the analysis of single-cell chromatin data
Geo ScienceSkill source unconfirmed
419GitHub
AllenSDK
AllenInstitute
code for reading and processing Allen Institute for Brain Science data
Geo ScienceSkill source unconfirmed
395GitHub
Mixcr
milaboratory
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Geo ScienceSkill source unconfirmed
393GitHub