AI Agent Skills

Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and gener…

End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCoun…

Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including metho…

High accuracy RAG for answering questions from scientific documents with citations

Proposal-first scientific writing pipeline, installed under the compatibility trigger researchwrite and the repository package name nature-proposal-writer. Use for compo…

Notes on Scientific Computing for Biomechanics and Motor Control

Run, compile and execute JavaScript for Scientific Computing and Data Visualization TOTALLY TOTALLY TOTALLY in your BROWSER! An open source scientific computing environm…

📄 ⚙️ ETL processes for medical and scientific papers

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descripto…

Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. Use for…

Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featuriza…

Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, m…

MeteoInfo: GIS, scientific computation and visualization environment.

Literature Scanner: Automated collection & analyses of the scientific literature.

Build a complete Nature-style Chinese PPTX presentation from a scientific paper, preprint, PDF, article text, figure legends, or reading notes. Use for journal club, gro…

Create, revise, audit, and export submission-grade scientific figures for Nature-family and other high-impact venues in Python (matplotlib/seaborn) or R (ggplot