Seqkit
shenwei356
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Geo ScienceSkill source unconfirmed
1.6KGitHub
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Results: 86
Minimap2
lh3
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Geo ScienceSkill source unconfirmed
2.2KGitHub
Scikit Bio
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Geo ScienceSkill source unconfirmed
1.2KGitHub
1.2KGitHub
Cromwell
broadinstitute
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Geo ScienceSkill source unconfirmed
1.1KGitHub
1.1KGitHub
Omicverse
omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Geo ScienceSkill source unconfirmed
1KGitHub
Zato
zatosource
ESB, SOA, REST, APIs and Cloud Integrations in Python
Geo ScienceSkill source unconfirmed
1KGitHub
Scispacy
allenai
A full spaCy pipeline and models for scientific/biomedical documents.
Geo ScienceSkill source unconfirmed
2KGitHub
Foldseek
steineggerlab
Foldseek enables fast and sensitive comparisons of large structure sets.
Geo ScienceSkill source unconfirmed
1.2KGitHub
Csvtk
shenwei356
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
Geo ScienceSkill source unconfirmed
1.2KGitHub
Rush
shenwei356
A cross-platform command-line tool for executing jobs in parallel
Geo ScienceSkill source unconfirmed
1.1KGitHub
Ncbi Genome Download
kblin
Scripts to download genomes from the NCBI FTP servers
Geo ScienceSkill source unconfirmed
1.1KGitHub
Adam
bigdatagenomics
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Geo ScienceSkill source unconfirmed
1.1KGitHub
Getting Started With Genomics Tools And Resources
crazyhottommy
Unix, R and python tools for genomics and data science
Geo ScienceSkill source unconfirmed
1.4KGitHub
Single Cell Pseudotime
agitter
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Geo ScienceSkill source unconfirmed
444GitHub