AI Agent Skills

Portfolio of data science projects completed by me for academic, self learning, and hobby purposes.

Turns a topic into a ranked reading list of the best papers plus a two-column, arXiv-ready literature-review/survey draft grounded in verified citations. Use when a rese…

Build, slice, concatenate, read, and write AnnData annotated data matrices (obs, var, X, layers, obsm, uns) — the scverse data STRUCTURE, not an analysis pipeline. Use w…

Predict genome-wide functional genomics tracks from DNA sequence with Borzoi (Linder 2025) — a sequence-to-function model outputting RNA-seq, CAGE, ATAC, and ChIP covera…

Query the CZ CELLxGENE Census (61M+ cells) programmatically via cellxgene-census and TileDB-SOMA, slicing expression by tissue, disease, or cell type and returning AnnDa…

Parse and write FCS (Flow Cytometry Standard) files v2.0-3.1 with FlowIO — extract event data as NumPy arrays, read $-keyword metadata and channel/parameter definitions,…

Extract and preprocess tiles from whole-slide images (WSI) with histolab — OpenSlide-backed slide loading, tissue detection and masks, Random/Grid/Score tile extraction,…

Design protein sequences around bound ligands, metals, and nucleic acids with LigandMPNN (Dauparas 2023) — inverse folding that conditions on non-protein context, so bin…

Polish academic and research writing for clarity, structure, terminology, argumentation, and cautious claims without inventing evidence or citations.

Plan, build, render, and verify academic presentation decks with citations, accessible visuals, clear argument flow, speaker-ready pacing, and visual QA.

Plan, create, and review academic presentations for conference talks, thesis defenses, seminars, lab meetings, and paper-to-slide workflows.

Plan, draft, revise, and audit theses, papers, literature reviews, methods, results, and discussions for argument, evidence, structure, citations, and style.

Use when user needs academic diagrams, methodology figures, statistical plots, or presentation slides from text descriptions or data files. Also use for evaluating gener…

Apply small, meaning-preserving rhetorical edits to a finished academic manuscript, to counter wording-driven LLM review penalties while keeping the scientific assessmen…

Verify every statistical claim by fetching cited URLs + checking the data appears on the page. Crossref-first for academic; Tavily-fallback for industry. Replaces fabric…

Domain expertise for Ai2 Asta MCP tools (Semantic Scholar corpus). Intent-to-tool routing, safe defaults, workflow patterns, and pitfall warnings for academic paper sear…