Biojava
biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Geo ScienceSkill source unconfirmed
622GitHub
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Results: 28
585GitHub
523GitHub
Adam
bigdatagenomics
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Geo ScienceSkill source unconfirmed
1.1KGitHub
Gatk
broadinstitute
Official code repository for GATK versions 4 and up
Geo ScienceSkill source unconfirmed
2KGitHub
H3 Java
uber
Java bindings for H3, a hierarchical hexagonal geospatial indexing system
Geo ScienceSkill source unconfirmed
333GitHub
P2rank
rdk
P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
Geo ScienceSkill source unconfirmed
433GitHub
Deepsomatic
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
Geo ScienceSkill source unconfirmed
311GitHub
Graphhopper
graphhopper
Open source routing engine for OpenStreetMap. Use it as Java library or standalone web server.
Geo ScienceSkill source unconfirmed
6.5KGitHub
Sedona
apache
A cluster computing framework for processing large-scale geospatial data
Geo ScienceSkill source unconfirmed
2.4KGitHub
1.9KGitHub
Ofbiz Framework
apache
Apache OFBiz is an open source product for the automation of enterprise processes. It includes framework components and business applications for ERP, CRM, E-Business/E-…
Geo ScienceSkill source unconfirmed
1.1KGitHub
450GitHub
Ctakes
apache
Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.
Geo ScienceSkill source unconfirmed
135GitHub
Bioconvert
bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Geo ScienceSkill source unconfirmed
391GitHub
Hgvs
biocommons
Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).
Geo ScienceSkill source unconfirmed
291GitHub