Fastp
OpenGene
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Geo ScienceSkill source unconfirmed
2.4KGitHub
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Results · “fast-attention”
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Candidates in this shortlist, not the full registry. GitHub stars belong to repositories, not individual skills.
Results: 18
Pyfastx
lmdu
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Geo ScienceSkill source unconfirmed
295GitHub
254GitHub
MMseqs2
soedinglab
MMseqs2: ultra fast and sensitive search and clustering suite
Geo ScienceSkill source unconfirmed
2.1KGitHub
Foldseek
steineggerlab
Foldseek enables fast and sensitive comparisons of large structure sets.
Geo ScienceSkill source unconfirmed
1.2KGitHub
Salmon
COMBINE-lab
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Geo ScienceSkill source unconfirmed
893GitHub
794GitHub
Tgv
zeqianli
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
Geo ScienceSkill source unconfirmed
477GitHub
Pyemd
wmayner
[Deprecated; use POT instead] Fast EMD for Python: a wrapper for Pele and Werman's C++ implementation of the Earth Mover's Distance metric
Geo ScienceSkill source unconfirmed
492GitHub
Flutter Maplibre Gl
maplibre
Flutter plugin for MapLibre: fast, customizable, vendor‑neutral vector & raster maps (fork of flutter-mapbox-gl)
Geo ScienceSkill source unconfirmed
341GitHub
445GitHub
Exactextractr
isciences
R package for fast and accurate raster zonal statistics
Geo ScienceSkill source unconfirmed
306GitHub
Kaiju
bioinformatics-centre
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Geo ScienceSkill source unconfirmed
302GitHub
Sage
lazear
Proteomics search & quantification so fast that it feels like magic
Geo ScienceSkill source unconfirmed
297GitHub
Snow Owl
b2ihealthcare
:owl: Snow Owl Terminology Server - a production-ready, fast, scalable, FHIR Terminology Service compliant server that supports SNOMED CT International and Extensions, L…
Geo ScienceSkill source unconfirmed
292GitHub
Somalier
brentp
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Geo ScienceBlocked
325GitHub