Pysam
pysam-developers
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the…
Geo ScienceSkill source unconfirmed
895GitHub
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2.8KGitHub
6.3KGitHub
5.2KGitHub
Biopython
biopython
Official git repository for Biopython (originally converted from CVS)
Geo ScienceSkill source unconfirmed
5.1KGitHub
Leafmap
opengeos
A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment
Geo ScienceSkill source unconfirmed
3.7KGitHub
Buntdb
tidwall
BuntDB is an embeddable, in-memory key/value database for Go with custom indexing and geospatial support
Geo ScienceSkill source unconfirmed
4.9KGitHub
Proj4js
proj4js
JavaScript library to transform coordinates from one coordinate system to another, including datum transformations
Geo ScienceSkill source unconfirmed
2.2KGitHub
Postgis
postgis
PostGIS spatial database extension to PostgreSQL [mirror]
Geo ScienceSkill source unconfirmed
2.1KGitHub
Gatk
broadinstitute
Official code repository for GATK versions 4 and up
Geo ScienceSkill source unconfirmed
2KGitHub
1.9KGitHub
1.9KGitHub
1.8KGitHub
Minimap2
lh3
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Geo ScienceSkill source unconfirmed
2.2KGitHub
Pyproj
pyproj4
Python interface to PROJ (cartographic projections and coordinate transformations library)
Geo ScienceSkill source unconfirmed
1.2KGitHub
Scikit Bio
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Geo ScienceSkill source unconfirmed
1.2KGitHub