PyDESeq2
scverse
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Geo ScienceReview before use
753GitHub
OPENAGENTSKILL / DIRECTORY
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Results · “chip-seq”
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Omicverse
omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Geo ScienceReview before use
1KGitHub
Salmon
COMBINE-lab
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Geo ScienceReview before use
893GitHub
Single Cell Pseudotime
agitter
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Geo ScienceReview before use
444GitHub
MLLMCelltype
cafferychen777
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
Geo ScienceReview before use
646GitHub
SciAgent Skills
jaechang-hits
197 bioinformatics & life science skills for Claude Code and AI agents — BixBench 92.0% accuracy. RNA-seq, single-cell, drug discovery, proteomics, and more. Powers Omic…
208GitHub
External platform skills
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