Jcvi
tanghaibao
Python library to facilitate genome assembly, annotation, and comparative genomics
Geo ScienceSkill source unconfirmed
918GitHub
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Results: 186
MLLMCelltype
cafferychen777
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
Geo ScienceSkill source unconfirmed
646GitHub
Cobrapy
opencobra
COBRApy is a package for constraint-based modeling of metabolic networks.
Geo ScienceSkill source unconfirmed
568GitHub
Geo Index
georust
A Rust crate and Python library for packed, immutable, zero-copy spatial indexes.
Geo ScienceSkill source unconfirmed
194GitHub
Anvio
merenlab
An analysis and visualization platform for 'omics data
Geo ScienceSkill source unconfirmed
526GitHub
Pylbm
pylbm
Numerical simulations using flexible Lattice Boltzmann solvers
Geo ScienceSkill source unconfirmed
171GitHub
Bakta
oschwengers
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Geo ScienceSkill source unconfirmed
652GitHub
Cellrank
scverse
CellRank: dynamics from multi-view single-cell data
Geo ScienceSkill source unconfirmed
453GitHub
DRAM
WrightonLabCSU
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Geo ScienceSkill source unconfirmed
335GitHub
Oq Engine
gem
OpenQuake Engine: a software for Seismic Hazard and Risk Analysis
Geo ScienceSkill source unconfirmed
439GitHub
GTDBTk
Ecogenomics
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Geo ScienceSkill source unconfirmed
607GitHub
422GitHub
420GitHub
591GitHub
PyGenomeViz
moshi4
A genome visualization python package for comparative genomics
Geo ScienceSkill source unconfirmed
410GitHub
Pathsim
pathsim
A Python native dynamical system simulation framework in the block diagram paradigm.
Geo ScienceSkill source unconfirmed
389GitHub