Sarek
nf-core
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Geo ScienceSkill source unconfirmed
574GitHub
OPENAGENTSKILL / DIRECTORY
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Results ยท โcross-domain-analysisโ
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Candidates in this shortlist, not the full registry. GitHub stars belong to repositories, not individual skills.
Results: 364
Cobrapy
opencobra
COBRApy is a package for constraint-based modeling of metabolic networks.
Geo ScienceSkill source unconfirmed
568GitHub
BioClaw
Runchuan-BU
AI-Powered Bioinformatics Research Assistant. Built on OpenClaw.
Geo ScienceSkill source unconfirmed
389GitHub
Quackosm
kraina-ai
QuackOSM: an open-source Python and CLI tool for reading OpenStreetMap PBF files using DuckDB
Geo ScienceSkill source unconfirmed
367GitHub
Single Cell Pseudotime
agitter
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Geo ScienceSkill source unconfirmed
444GitHub
Maftools
PoisonAlien
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Geo ScienceSkill source unconfirmed
495GitHub
894GitHub
Anvio
merenlab
An analysis and visualization platform for 'omics data
Geo ScienceSkill source unconfirmed
526GitHub
519GitHub
Sniffles
fritzsedlazeck
Structural variation caller using third generation sequencing
Geo ScienceSkill source unconfirmed
662GitHub
GeoDeep
uav4geo
Free and open source library for AI object detection and semantic segmentation in geospatial rasters. ๐
Geo ScienceSkill source unconfirmed
456GitHub
Biocypher
biocypher
A unifying framework for biomedical research knowledge graphs
Geo ScienceSkill source unconfirmed
313GitHub
Bakta
oschwengers
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Geo ScienceSkill source unconfirmed
652GitHub
Sage
lazear
Proteomics search & quantification so fast that it feels like magic
Geo ScienceSkill source unconfirmed
297GitHub
838GitHub
286GitHub
External platform skills
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