Skill Registry

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Choose by scenario, quality, and trust signals.

Showing 1-16 of 91 ranked candidates in geo-science

Best blend of quality, stars, freshness, and agent usage

1

Erpnext

VERIFIEDEXCELLENT · 100TRUST · 96SAFE · VERIFIEDCODING

Free and Open Source Enterprise Resource Planning (ERP)

$ npx skills add frappe/erpnext
35.7K stars75 quality96 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

pythonhealth-data
by frappeDetailsQuick view
2

Biopython

VERIFIEDEXCELLENT · 100TRUST · 91SAFE · REVIEWEDCODING

Official git repository for Biopython (originally converted from CVS)

$ npx skills add biopython/biopython
5.1K stars68 quality91 trustReviewedClaude Code8d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…Review: License is unclear
Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation

Claude Code + CLI · 4 targets

pythonbioinformatics
by biopythonDetailsQuick view
3

Nextflow

VERIFIEDEXCELLENT · 100TRUST · 92SAFE · VERIFIEDCODING

A DSL for data-driven computational pipelines

$ npx skills add nextflow-io/nextflow
3.4K stars66 quality92 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

groovybioinformatics
by nextflow-ioDetailsQuick view
4

ColabFold

VERIFIEDEXCELLENT · 100TRUST · 93SAFE · VERIFIEDDATA

Making Protein folding accessible to all!

$ npx skills add sokrypton/ColabFold
2.8K stars66 quality93 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario Sports analytics

Claude Code + CLI · 4 targets

jupyter-notebookbioinformatics
by sokryptonDetailsQuick view
5

Scanpy

VERIFIEDEXCELLENT · 100TRUST · 93SAFE · VERIFIEDCODING

Single-cell analysis in Python. Scales to >100M cells.

$ npx skills add scverse/scanpy
2.5K stars65 quality93 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

pythonbioinformatics
by scverseDetailsQuick view
6

Fastp

VERIFIEDEXCELLENT · 100TRUST · 95SAFE · VERIFIEDCODING

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

$ npx skills add OpenGene/fastp
2.4K stars65 quality95 trustVerifiedClaude Code16d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

c++bioinformatics
by OpenGeneDetailsQuick view
7

Minimap2

VERIFIEDEXCELLENT · 100TRUST · 89SAFE · REVIEWEDCODING

A versatile pairwise aligner for genomic and spliced nucleotide sequences

$ npx skills add lh3/minimap2
2.2K stars65 quality89 trustReviewedClaude Code28d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…Review: License is unclear
Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation

Claude Code + CLI · 4 targets

cbioinformatics
by lh3DetailsQuick view
8

MMseqs2

VERIFIEDEXCELLENT · 100TRUST · 93SAFE · VERIFIEDCODING

MMseqs2: ultra fast and sensitive search and clustering suite

$ npx skills add soedinglab/MMseqs2
2.1K stars65 quality93 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

cbioinformatics
by soedinglabDetailsQuick view
9

Gatk

VERIFIEDEXCELLENT · 99TRUST · 89SAFE · REVIEWEDCODING

Official code repository for GATK versions 4 and up

$ npx skills add broadinstitute/gatk
2.0K stars65 quality89 trustReviewedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…Review: License is unclear
Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario Coding agents

Claude Code + CLI · 4 targets

javabioinformatics
by broadinstituteDetailsQuick view
10

Open Wearables

VERIFIEDEXCELLENT · 100TRUST · 91SAFE · VERIFIEDCODING

Self-hosted platform to unify wearable health data through one AI-ready API.

$ npx skills add the-momentum/open-wearables
1.9K stars65 quality91 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

pythonhealth-data
by the-momentumDetailsQuick view
11

Bioconda Recipes

VERIFIEDEXCELLENT · 100TRUST · 89SAFE · REVIEWEDCODING

Conda recipes for the bioconda channel.

$ npx skills add bioconda/bioconda-recipes
1.8K stars65 quality89 trustReviewed with permission notesClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation

Claude Code + CLI · 4 targets

shellbioinformatics
by biocondaDetailsQuick view
12

Galaxy

VERIFIEDEXCELLENT · 99TRUST · 89SAFE · REVIEWEDCODING

Data intensive science for everyone.

$ npx skills add galaxyproject/galaxy
1.8K stars64 quality89 trustReviewedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…Review: License is unclear
Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario GitHub automation

Claude Code + CLI · 4 targets

pythonbioinformatics
by galaxyprojectDetailsQuick view
13

Seqkit

VERIFIEDEXCELLENT · 100TRUST · 92SAFE · VERIFIEDCODING

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

$ npx skills add shenwei356/seqkit
1.6K stars64 quality92 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

gobioinformatics
by shenwei356DetailsQuick view
14

Scikit Bio

VERIFIEDEXCELLENT · 100TRUST · 95SAFE · VERIFIEDCODING

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

$ npx skills add scikit-bio/scikit-bio
1.2K stars63 quality95 trustVerifiedClaude Code8d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

pythonbioinformatics
by scikit-bioDetailsQuick view
15

Graphein

VERIFIEDEXCELLENT · 100TRUST · 92SAFE · REVIEWEDDATA

Protein Graph Library

$ npx skills add a-r-j/graphein
1.2K stars63 quality92 trustReviewedClaude Code22d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…Review: Documentation summary is thin
Safety gateGood audit and safety signals with no high-risk permission hints in public metadata.

Scenario Data analysis

Claude Code + CLI · 4 targets

jupyter-notebookbioinformatics
by a-r-jDetailsQuick view
16

Cromwell

VERIFIEDEXCELLENT · 100TRUST · 94SAFE · VERIFIEDCODING

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

$ npx skills add broadinstitute/cromwell
1.1K stars63 quality94 trustVerifiedClaude Code1d since pushSafe to try
QualityHigh-confidence pick with strong adoption and healthy maintenance signals.
TrustStrong OpenAgentSkill Trust Score across adoption, recent maintenance, license clarity, documentation, dependency/…
Safety gateStrong metadata, audit, install, and review signals. Suitable for agent shortlists after normal workspace review.

Scenario GitHub automation

Claude Code + CLI · 4 targets

scalabioinformatics
by broadinstituteDetailsQuick view

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Showing the strongest 16 results to keep the registry fast for humans and agents. Refine by use case, platform, stars, or search query for a narrower shortlist.

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