molecular-visualization-3dmol
jaechang-hits
3Dmol.js WebGL molecular visualization emitted as self-contained HTML. Render structures (PDB/SDF/XYZ/MOL2/cube) with stick, sphere, cartoon, line, and surface styles; a…
DesignClaude Code
360GitHub
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Results · “molecular-biology”
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Results: 8
biopython
K-Dense-AI
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez)…
DesignClaude Code
38.5KGitHub
deepchem
K-Dense-AI
Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featuriza…
DesignClaude Code
43.5KGitHub
cobrapy
K-Dense-AI
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
DesignClaude Code
41.3KGitHub
openbabel
jinzhezenggroup
A versatile CLI tool for converting molecular file formats, generating 3D atomic coordinates from SMILES, rendering 2D chemical structure images, and preparing or extrac…
DesignClaude Code
135GitHub
eric-s-lander
K-Dense-AI
Use this skill whenever you are reasoning about large-scale scientific projects, genomics, bioethics, data infrastructure, or long-term medical translation. Eric S. Land…
DesignClaude Code
122GitHub
alterlab-cobrapy
AlterLab-IEU
Build and analyze genome-scale constraint-based metabolic models with COBRApy — flux balance analysis (FBA), flux variability analysis (FVA), gene and reaction knockouts…
DesignClaude Code
66GitHub
adhd
darkroomengineering
Parallel divergent ideation — spawns N isolated generator agents under different cognitive frames (regulator, biology, speedrunner, 10-year-old, zero-budget), then a cri…
DesignClaude Code
42GitHub
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