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Results for “ncbi-sra”

Exact name and slug matches are checked against the live registry before ranked alternatives.

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Choose by scenario, quality, and trust signals.

Use casePlatform fitQuality tierTrust profileSafety gateGitHub adoption

Showing 1-4 of 4 ranked candidates matching "ncbi-sra"

Best blend of relevance, quality, freshness, and verified outcomes

Ncbi Genome Download

VERIFIEDEXCELLENT · 86TRUST · 82SAFE · REVIEWEDCODING

Scripts to download genomes from the NCBI FTP servers

$ npx skills add kblin/ncbi-genome-download

1.1K stars56 quality82 trustReviewed with permission notes5mo since pushSafe to try

QualityHigh-confidence pick with strong adoption and healthy maintenance signals.

TrustGood trust signals with a few areas worth checking before rollout.Review: Documentation summary is thin

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by kblinDetailsQuick view

Amr

PROMISING · 66TRUST · 74SAFE · REVIEWEDCODING

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

$ npx skills add ncbi/amr

370 stars49 quality74 trustReviewed with permission notes3mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: License is unclear

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

c++bioinformatics

by ncbiDetailsQuick view

Taxonkit

STRONG · 72TRUST · 78SAFE · REVIEWEDCODING

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

$ npx skills add shenwei356/taxonkit

473 stars49 quality78 trustReviewed with permission notes3mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

gobioinformatics

by shenwei356DetailsQuick view

Sequenceserver

PROMISING · 66TRUST · 77SAFE · REVIEWEDDATA

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

$ npx skills add wurmlab/sequenceserver

299 stars44 quality77 trustReviewed with permission notes3mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario Data analysis · I need my agent to analyze CSV data, produce insights, and explain trends.

CLI + Codex · 4 targets

javascriptbioinformatics

by wurmlabDetailsQuick view

Live registry search

Results for “ncbi-sra”

Exact name and slug matches are checked against the live registry before ranked alternatives.

Clear search

Decision filters

Choose by scenario, quality, and trust signals.

Use casePlatform fitQuality tierTrust profileSafety gateGitHub adoption

Showing 1-4 of 4 ranked candidates matching "ncbi-sra"

Best blend of relevance, quality, freshness, and verified outcomes

Ncbi Genome Download

VERIFIEDEXCELLENT · 86TRUST · 82SAFE · REVIEWEDCODING

Scripts to download genomes from the NCBI FTP servers

$ npx skills add kblin/ncbi-genome-download

1.1K stars56 quality82 trustReviewed with permission notes5mo since pushSafe to try

QualityHigh-confidence pick with strong adoption and healthy maintenance signals.

TrustGood trust signals with a few areas worth checking before rollout.Review: Documentation summary is thin

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

pythonbioinformatics

by kblinDetailsQuick view

Amr

PROMISING · 66TRUST · 74SAFE · REVIEWEDCODING

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

$ npx skills add ncbi/amr

370 stars49 quality74 trustReviewed with permission notes3mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: License is unclear

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

c++bioinformatics

by ncbiDetailsQuick view

Taxonkit

STRONG · 72TRUST · 78SAFE · REVIEWEDCODING

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

$ npx skills add shenwei356/taxonkit

473 stars49 quality78 trustReviewed with permission notes3mo since pushNeeds review

QualitySolid option that is likely worth shortlisting for production workflows.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario GitHub automation · I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.

CLI + Codex · 4 targets

gobioinformatics

by shenwei356DetailsQuick view

Sequenceserver

PROMISING · 66TRUST · 77SAFE · REVIEWEDDATA

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

$ npx skills add wurmlab/sequenceserver

299 stars44 quality77 trustReviewed with permission notes3mo since pushNeeds review

QualityUseful candidate, but compare it with alternatives before adopting.

TrustGood trust signals with a few areas worth checking before rollout.Review: Quality score needs review

Safety gateUsable candidate, but the agent should surface permission and audit notes before installation.

Scenario Data analysis · I need my agent to analyze CSV data, produce insights, and explain trends.

CLI + Codex · 4 targets

javascriptbioinformatics

by wurmlabDetailsQuick view

AI Agent Skills Directory

Results for “ncbi-sra”

Choose by scenario, quality, and trust signals.

Ncbi Genome Download

Amr

Taxonkit

Sequenceserver

AI Agent Skills Directory

Results for “ncbi-sra”

Choose by scenario, quality, and trust signals.

Ncbi Genome Download

Amr

Taxonkit

Sequenceserver

AI Agent Skills Directory

Results for “ncbi-sra”

Choose by scenario, quality, and trust signals.

Ncbi Genome Download

Amr

Taxonkit

Sequenceserver