Skill audit report
cellxgene-census Audit report.
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.
OpenAgentSkill Trust Score
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub adoption
PASS100
38K GitHub stars
Stars/forks activity
PASS97
38K stars, 3.6K forks; issue activity unavailable in current metadata
Recent maintenance
PASS88
2mo since push
License clarity
PASS86
MIT
README/SKILL.md completeness
PASS86
Metadata includes enough usage and workflow context
Dependency/runtime risk
WARN54
command execution surface, external package install surface
Install availability
PASS92
npx skills add K-Dense-AI/scientific-agent-skills --skill cellxgene-census
Install command safety
PASS92
standard package or runtime install path
Permission surface
WARN50
shell or command execution, network or browser access
Repository evidence
PASS86
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/cellxgene-census
Review status
INFO66
AI review data available
Agent Proven outcomes
INFO54
No agent outcome data yet
Checks
Install and adoption review
Install path
92
npx skills add K-Dense-AI/scientific-agent-skills --skill cellxgene-census
Repository
88
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/cellxgene-census
License
86
MIT
Maintenance
88
2mo since push
AI review
55
The skill declares Bash, Write, and Edit permissions even though the core workflow is read-only querying of public Census data; this broadens the agent attack surface more than necessary.
README/SKILL.md completeness
86
Usable description available
Dependency risk
54
command execution surface, external package install surface
Install command safety
92
standard package or runtime install path
Permission surface
50
shell or command execution, network or browser access
Stars/forks activity
97
38K stars, 3.6K forks; issue activity unavailable in current metadata
Adoption
88
38K GitHub stars
Warnings
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- The skill declares Bash, Write, and Edit permissions even though the core workflow is read-only querying of public Census data; this broadens the agent attack surface more than necessary.
- The SKILL.md excerpt does not include an explicit safe-handling note that values from public datasets should be treated as untrusted data, especially when used in dynamically constructed filters or displayed to users.
- The excerpt is truncated, so completeness of setup, limitations, and error-handling documentation could not be fully verified from SKILL.md alone; references are present and appear substantive.
- Permission surface needs review: shell or command execution, network or browser access
- Dependency/runtime risk: command execution surface, external package install surface
- Permission surface: shell or command execution, network or browser access
Method
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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