Rapport d’audit du skill
bioservices Rapport d’audit.
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
Trust Score OpenAgentSkill
Trust Score OpenAgentSkill
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
Adoption GitHub
Validé100
38K stars GitHub
Activité stars/forks
Validé97
38K stars et 3.6K forks; l’activité des issues n’est pas disponible dans les métadonnées actuelles
Maintenance récente
Validé88
1 mois depuis le dernier push
Clarté de licence
Validé86
GPLv3 license
Complétude README/SKILL.md
Validé86
Les métadonnées incluent suffisamment de contexte d’usage et de workflow
Risque dépendances/runtime
Échoué28
command execution surface, credential or environment access
Disponibilité de l’installation
Validé92
npx skills add K-Dense-AI/scientific-agent-skills --skill bioservices
Sécurité de la commande d’installation
Validé92
Chemin d’installation standard de package ou runtime
Surface de permissions
Échoué18
secrets or environment access, shell or command execution
Preuve du dépôt
Validé86
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/bioservices
État de revue
Info66
Données de revue IA disponibles
Résultats prouvés par Agent
Info54
Pas encore de données de résultats Agent
Vérifications
Revue d’installation et d’adoption
Chemin d’installation
92
npx skills add K-Dense-AI/scientific-agent-skills --skill bioservices
Dépôt
88
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/bioservices
Licence
86
GPLv3 license
Maintenance
88
1 mois depuis le dernier push
Revue IA
55
SKILL.md does not explicitly include a setup or installation step for the bioservices package; it assumes the dependency is already available.
Complétude README/SKILL.md
86
Usable description available
Risque de dépendances
28
command execution surface, credential or environment access
Sécurité de la commande d’installation
92
Chemin d’installation standard de package ou runtime
Surface de permissions
18
secrets or environment access, shell or command execution
Activité stars/forks
97
38K stars et 3.6K forks; l’activité des issues n’est pas disponible dans les métadonnées actuelles
Adoption
88
38K stars GitHub
Avertissements
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- SKILL.md does not explicitly include a setup or installation step for the bioservices package; it assumes the dependency is already available.
- The documentation correctly warns about removed UniChem helper methods in bioservices 1.16.0, but the included scripts should be audited to ensure they do not still call deprecated methods like get_compound_id_from_kegg.
- No explicit input validation or data-handling guidance is given for untrusted compound names, identifiers, or web API responses, which is relevant for a network-connected bioinformatics skill.
- Permission surface needs review: secrets or environment access, shell or command execution
- Dependency/runtime risk: command execution surface, credential or environment access
- Permission surface: secrets or environment access, shell or command execution
Méthode
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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