Skill audit report
bioservices Audit report.
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
OpenAgentSkill Trust Score
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub adoption
PASS100
38K GitHub stars
Stars/forks activity
PASS97
38K stars, 3.6K forks; issue activity unavailable in current metadata
Recent maintenance
PASS88
2mo since push
License clarity
PASS86
GPLv3 license
README/SKILL.md completeness
PASS86
Metadata includes enough usage and workflow context
Dependency/runtime risk
FAIL28
command execution surface, credential or environment access
Install availability
PASS92
npx skills add K-Dense-AI/scientific-agent-skills --skill bioservices
Install command safety
PASS92
standard package or runtime install path
Permission surface
FAIL18
secrets or environment access, shell or command execution
Repository evidence
PASS86
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/bioservices
Review status
INFO66
AI review data available
Agent Proven outcomes
INFO54
No agent outcome data yet
Checks
Install and adoption review
Install path
92
npx skills add K-Dense-AI/scientific-agent-skills --skill bioservices
Repository
88
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/bioservices
License
86
GPLv3 license
Maintenance
88
2mo since push
AI review
55
SKILL.md does not explicitly include a setup or installation step for the bioservices package; it assumes the dependency is already available.
README/SKILL.md completeness
86
Usable description available
Dependency risk
28
command execution surface, credential or environment access
Install command safety
92
standard package or runtime install path
Permission surface
18
secrets or environment access, shell or command execution
Stars/forks activity
97
38K stars, 3.6K forks; issue activity unavailable in current metadata
Adoption
88
38K GitHub stars
Warnings
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- SKILL.md does not explicitly include a setup or installation step for the bioservices package; it assumes the dependency is already available.
- The documentation correctly warns about removed UniChem helper methods in bioservices 1.16.0, but the included scripts should be audited to ensure they do not still call deprecated methods like get_compound_id_from_kegg.
- No explicit input validation or data-handling guidance is given for untrusted compound names, identifiers, or web API responses, which is relevant for a network-connected bioinformatics skill.
- Permission surface needs review: secrets or environment access, shell or command execution
- Dependency/runtime risk: command execution surface, credential or environment access
- Permission surface: secrets or environment access, shell or command execution
Method
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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