Informe de auditoría del skill
biopython Informe de auditoría.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Trust Score de OpenAgentSkill
Trust Score de OpenAgentSkill
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
Adopción en GitHub
Aprobado100
38K estrellas de GitHub
Actividad de stars/forks
Aprobado97
38K estrellas y 3.6K forks; la actividad de issues no está disponible en los metadatos actuales
Mantenimiento reciente
Aprobado88
1 meses desde el último push
Claridad de licencia
Aprobado86
Biopython License Agreement
Completitud de README/SKILL.md
Aprobado86
Los metadatos incluyen suficiente contexto de uso y flujo de trabajo
Riesgo de dependencias/runtime
Fallido28
command execution surface, credential or environment access
Disponibilidad de instalación
Aprobado92
npx skills add K-Dense-AI/scientific-agent-skills --skill biopython
Seguridad del comando de instalación
Aprobado92
Ruta estándar de paquete o instalación en tiempo de ejecución
Superficie de permisos
Fallido18
secrets or environment access, shell or command execution
Evidencia del repositorio
Aprobado86
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/biopython
Estado de revisión
Info66
Hay datos de revisión por IA disponibles
Resultados comprobados por Agent
Info54
Aún no hay datos de resultados del Agent
Comprobaciones
Revisión de instalación y adopción
Ruta de instalación
92
npx skills add K-Dense-AI/scientific-agent-skills --skill biopython
Repositorio
88
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/biopython
Licencia
86
Biopython License Agreement
Mantenimiento
88
1 meses desde el último push
Revisión por IA
55
SKILL.md references `references/sequence_io.md` for sequence handling, but the submitted skill directory only includes `advanced.md`, `alignment.md`, `blast.md`, `databases.md`, and `phylogenetics.md`. The referenced file appears to be missing.
Completitud de README/SKILL.md
86
Usable description available
Riesgo de dependencias
28
command execution surface, credential or environment access
Seguridad del comando de instalación
92
Ruta estándar de paquete o instalación en tiempo de ejecución
Superficie de permisos
18
secrets or environment access, shell or command execution
Actividad de stars/forks
97
38K estrellas y 3.6K forks; la actividad de issues no está disponible en los metadatos actuales
Adopción
88
38K estrellas de GitHub
Advertencias
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- SKILL.md references `references/sequence_io.md` for sequence handling, but the submitted skill directory only includes `advanced.md`, `alignment.md`, `blast.md`, `databases.md`, and `phylogenetics.md`. The referenced file appears to be missing.
- The NCBI_EMAIL environment variable is listed as optional in metadata, while the documentation correctly states that NCBI policy requires an email for Entrez. The example hardcodes a placeholder instead of reading from the environment, which may cause failed Entrez calls.
- The skill does not include an explicit license/attribution notice beyond the repository license declaration. If the content is derived from Biopython documentation, upstream copyright and license notices should be preserved.
- Permission surface needs review: secrets or environment access, shell or command execution
- Dependency/runtime risk: command execution surface, credential or environment access
- Permission surface: secrets or environment access, shell or command execution
Método
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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