Skill-Audit-Bericht
biopython Audit-Bericht.
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
OpenAgentSkill Trust Score
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub-Akzeptanz
Bestanden100
38K GitHub-Stars
Star-/Fork-Aktivität
Bestanden97
38K Stars und 3.6K Forks; Issue-Aktivität ist in den aktuellen Metadaten nicht verfügbar
Aktuelle Wartung
Bestanden88
1 Monate seit dem letzten Push
Lizenzklarheit
Bestanden86
Biopython License Agreement
README/SKILL.md-Vollständigkeit
Bestanden86
Metadaten enthalten ausreichend Nutzungs- und Workflow-Kontext
Abhängigkeits-/Laufzeitrisiko
Fehlgeschlagen28
command execution surface, credential or environment access
Installationsverfügbarkeit
Bestanden92
npx skills add K-Dense-AI/scientific-agent-skills --skill biopython
Sicherheit des Installationsbefehls
Bestanden92
Standard-Paket- oder Laufzeit-Installationspfad
Berechtigungsumfang
Fehlgeschlagen18
secrets or environment access, shell or command execution
Repository-Nachweis
Bestanden86
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/biopython
Prüfstatus
Info66
KI-Prüfdaten verfügbar
Agent-validierte Ergebnisse
Info54
Noch keine Agent-Ergebnisdaten
Prüfungen
Installations- und Adoptionsprüfung
Installationspfad
92
npx skills add K-Dense-AI/scientific-agent-skills --skill biopython
Repository
88
https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/biopython
Lizenz
86
Biopython License Agreement
Wartung
88
1 Monate seit dem letzten Push
KI-Prüfung
55
SKILL.md references `references/sequence_io.md` for sequence handling, but the submitted skill directory only includes `advanced.md`, `alignment.md`, `blast.md`, `databases.md`, and `phylogenetics.md`. The referenced file appears to be missing.
README/SKILL.md-Vollständigkeit
86
Usable description available
Abhängigkeitsrisiko
28
command execution surface, credential or environment access
Sicherheit des Installationsbefehls
92
Standard-Paket- oder Laufzeit-Installationspfad
Berechtigungsumfang
18
secrets or environment access, shell or command execution
Star-/Fork-Aktivität
97
38K Stars und 3.6K Forks; Issue-Aktivität ist in den aktuellen Metadaten nicht verfügbar
Akzeptanz
88
38K GitHub-Stars
Warnungen
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- SKILL.md references `references/sequence_io.md` for sequence handling, but the submitted skill directory only includes `advanced.md`, `alignment.md`, `blast.md`, `databases.md`, and `phylogenetics.md`. The referenced file appears to be missing.
- The NCBI_EMAIL environment variable is listed as optional in metadata, while the documentation correctly states that NCBI policy requires an email for Entrez. The example hardcodes a placeholder instead of reading from the environment, which may cause failed Entrez calls.
- The skill does not include an explicit license/attribution notice beyond the repository license declaration. If the content is derived from Biopython documentation, upstream copyright and license notices should be preserved.
- Permission surface needs review: secrets or environment access, shell or command execution
- Dependency/runtime risk: command execution surface, credential or environment access
- Permission surface: secrets or environment access, shell or command execution
Methode
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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