Star200+

Skill audit report

arboreto Audit report.

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

EXPERIMENTAL · REVIEWNeeds reviewGenerated Aug 22, 2026Heuristic metadata audit
88
Audit
83
Trust
92
Quality
81
Security
100
Maintain
92
Install

OpenAgentSkill Trust Score

83
Strong shortlist

OpenAgentSkill Trust Score

The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.

GitHub adoption

PASS

100

34K GitHub stars

Stars/forks activity

PASS

97

34K stars, 3.3K forks; issue activity unavailable in current metadata

Recent maintenance

PASS

100

2d since push

License clarity

PASS

86

BSD-3-Clause license

README/SKILL.md completeness

PASS

86

Metadata includes enough usage and workflow context

Dependency/runtime risk

INFO

62

command execution surface, external package install surface

Install availability

PASS

92

npx skills add K-Dense-AI/scientific-agent-skills --skill arboreto

Install command safety

PASS

92

standard package or runtime install path

Permission surface

WARN

48

shell or command execution, filesystem or document access

Repository evidence

PASS

86

https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/arboreto

Review status

PASS

88

AI review data available

Agent Proven outcomes

INFO

54

No agent outcome data yet

Checks

Install and adoption review

9 Passed · 6 Needs review

Install path

92

PASS

npx skills add K-Dense-AI/scientific-agent-skills --skill arboreto

Repository

88

PASS

https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/arboreto

License

86

PASS

BSD-3-Clause license

Maintenance

100

PASS

2d since push

AI review

88

PASS

Approved with no listed issues

README/SKILL.md completeness

86

PASS

Usable description available

Dependency risk

62

CHECK

command execution surface, external package install surface

Install command safety

92

PASS

standard package or runtime install path

Permission surface

48

FIX

shell or command execution, filesystem or document access

Stars/forks activity

97

PASS

34K stars, 3.3K forks; issue activity unavailable in current metadata

Adoption

88

PASS

34K GitHub stars

Warnings

  • Permission surface may require sandboxing
  • Quality score needs review
  • Permission surface needs review: shell or command execution, filesystem or document access
  • Permission surface: shell or command execution, filesystem or document access

Method

This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.

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