Skill audit report
3Dmol.js WebGL molecular visualization emitted as self-contained HTML. Render structures (PDB/SDF/XYZ/MOL2/cube) with stick, sphere, cartoon, line, and surface styles; animate trajectories with a frame-delay (interval, ms) control; and animate vibrational normal modes via vibrate() from per-atom dx/dy/dz displacements or from precomputed frames. Output standalone HTML that loads 3Dmol from a CDN, with optional play/pause and speed controls. Use for transition-state imaginary-mode animations, MD or reaction-path playback, docking poses, and orbital/density isosurfaces. For static 2D chemical structure drawings use rdkit-chemdraw-cdxml; for 2D statistical plots use matplotlib or plotly.
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub adoption
INFO62
360 GitHub stars
Stars/forks activity
WARN57
360 stars, 36 forks; issue activity unavailable in current metadata
Recent maintenance
PASS100
14d since push
License clarity
PASS86
BSD-3-Clause
README/SKILL.md completeness
PASS86
Metadata includes enough usage and workflow context
Dependency/runtime risk
WARN54
command execution surface, external package install surface
Install availability
PASS92
npx skills add jaechang-hits/SciAgent-Skills --skill molecular-visualization-3dmol
Install command safety
PASS92
standard package or runtime install path
Permission surface
WARN48
shell or command execution, filesystem or document access
Repository evidence
PASS86
https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/data-visualization/molecular-visualization-3dmol
Review status
INFO66
AI review data available
Agent Proven outcomes
INFO54
No agent outcome data yet
Checks
Install path
92
npx skills add jaechang-hits/SciAgent-Skills --skill molecular-visualization-3dmol
Repository
88
https://github.com/jaechang-hits/SciAgent-Skills/tree/main/skills/data-visualization/molecular-visualization-3dmol
License
86
BSD-3-Clause
Maintenance
100
14d since push
AI review
55
The SKILL.md instructs users to copy the generator script to their working directory before running, which is a minor workflow inconvenience but not a functional issue.
Warnings
Method
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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86
Usable description available
Dependency risk
54
command execution surface, external package install surface
Install command safety
92
standard package or runtime install path
Permission surface
48
shell or command execution, filesystem or document access
Stars/forks activity
57
360 stars, 36 forks; issue activity unavailable in current metadata
Adoption
68
360 GitHub stars
Financial decision safety
58
Research-only use: do not treat output as financial advice or execute a position without human approval.
Agent safety v2
Sparse or mixed signals. Useful for discovery, but not for autonomous installation.
Test manually in an isolated workspace and compare against safer alternatives.
Shell or command execution
highSkill metadata references terminal, CLI, shell, subprocess, or command execution workflows.
Browser automation
mediumSkill may drive a browser or interact with web pages.
Network access
mediumSkill likely fetches remote pages, APIs, repositories, or external services.
Filesystem access
mediumSkill may read or write project files, documents, generated artifacts, or local workspace state.