Skill audit report
Query the CZ CELLxGENE Census (61M+ cells) programmatically via cellxgene-census and TileDB-SOMA, slicing expression by tissue, disease, or cell type and returning AnnData. Use when pulling reference single-cell RNA-seq data from the largest curated public atlas, running population-scale queries, or benchmarking your data against a reference — for analyzing your own dataset use scanpy or scvi-tools. Part of the AlterLab Academic Skills suite.
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub adoption
WARN48
66 GitHub stars
Stars/forks activity
WARN48
66 stars, 13 forks; issue activity unavailable in current metadata
Recent maintenance
PASS100
13d since push
License clarity
PASS86
MIT
README/SKILL.md completeness
PASS86
Metadata includes enough usage and workflow context
Dependency/runtime risk
WARN54
command execution surface, external package install surface
Install availability
PASS92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-cellxgene
Install command safety
PASS92
standard package or runtime install path
Permission surface
WARN50
shell or command execution, network or browser access
Repository evidence
PASS86
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-cellxgene
Review status
WARN46
AI review approval is missing
Agent Proven outcomes
INFO54
No agent outcome data yet
Checks
Install path
92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-cellxgene
Repository
88
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-cellxgene
License
86
MIT
Maintenance
100
13d since push
AI review
55
Review approval is missing
README/SKILL.md completeness
86
Usable description available
Dependency risk
54
command execution surface, external package install surface
Install command safety
92
standard package or runtime install path
Permission surface
50
shell or command execution, network or browser access
Stars/forks activity
48
66 stars, 13 forks; issue activity unavailable in current metadata
Adoption
68
66 GitHub stars
Warnings
Method
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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