Skill audit report
Query 40+ bioinformatics web services through one consistent Python API with bioservices (UniProt, KEGG, ChEMBL, Reactome, Ensembl, NCBI and more). Use when a workflow must hit multiple databases together, map identifiers across services, or run cross-database analyses — for quick single-database lookups use gget, for sequence and file manipulation use biopython. Part of the AlterLab Academic Skills suite.
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub adoption
WARN48
66 GitHub stars
Stars/forks activity
WARN48
66 stars, 13 forks; issue activity unavailable in current metadata
Recent maintenance
PASS100
13d since push
License clarity
PASS86
GPL-3.0
README/SKILL.md completeness
PASS86
Metadata includes enough usage and workflow context
Dependency/runtime risk
WARN46
command execution surface, external package install surface
Install availability
PASS92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-bioservices
Install command safety
PASS92
standard package or runtime install path
Permission surface
FAIL36
shell or command execution, filesystem or document access
Repository evidence
PASS86
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-bioservices
Review status
PASS88
AI review data available
Agent Proven outcomes
INFO54
No agent outcome data yet
Checks
Install path
92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-bioservices
Repository
88
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-bioservices
License
86
GPL-3.0
Maintenance
100
13d since push
AI review
88
Approved with no listed issues
README/SKILL.md completeness
86
Usable description available
Dependency risk
46
command execution surface, external package install surface
Install command safety
92
standard package or runtime install path
Permission surface
36
shell or command execution, filesystem or document access
Stars/forks activity
48
66 stars, 13 forks; issue activity unavailable in current metadata
Adoption
68
66 GitHub stars
Warnings
Method
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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