Rapport d’audit du skill
alterlab-biopython Rapport d’audit.
Manipulate biological sequences, parse FASTA/GenBank/PDB files, run phylogenetics, and access NCBI/PubMed programmatically via Biopython (Bio.SeqIO, Bio.Entrez, Bio.PDB, Bio.Blast). Use when scripting custom bioinformatics pipelines, batch-processing sequence files, automating BLAST, or fetching records from Entrez — for quick one-off database lookups use gget, for unified multi-service integration use bioservices. Part of the AlterLab Academic Skills suite.
Trust Score OpenAgentSkill
Trust Score OpenAgentSkill
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
Adoption GitHub
Avertissement48
66 stars GitHub
Activité stars/forks
Avertissement48
66 stars et 13 forks; l’activité des issues n’est pas disponible dans les métadonnées actuelles
Maintenance récente
Validé88
1 mois depuis le dernier push
Clarté de licence
Validé86
MIT
Complétude README/SKILL.md
Validé86
Les métadonnées incluent suffisamment de contexte d’usage et de workflow
Risque dépendances/runtime
Échoué38
command execution surface, credential or environment access
Disponibilité de l’installation
Validé92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-biopython
Sécurité de la commande d’installation
Validé92
Chemin d’installation standard de package ou runtime
Surface de permissions
Échoué18
secrets or environment access, shell or command execution
Preuve du dépôt
Validé86
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-biopython
État de revue
Info66
Données de revue IA disponibles
Résultats prouvés par Agent
Info54
Pas encore de données de résultats Agent
Vérifications
Revue d’installation et d’adoption
Chemin d’installation
92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-biopython
Dépôt
88
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-biopython
Licence
86
MIT
Maintenance
88
1 mois depuis le dernier push
Revue IA
55
The SKILL.md references Biopython 1.87 as the current version, which may become outdated; consider noting that version numbers change and recommend checking the official docs.
Complétude README/SKILL.md
86
Usable description available
Risque de dépendances
38
command execution surface, credential or environment access
Sécurité de la commande d’installation
92
Chemin d’installation standard de package ou runtime
Surface de permissions
18
secrets or environment access, shell or command execution
Activité stars/forks
48
66 stars et 13 forks; l’activité des issues n’est pas disponible dans les métadonnées actuelles
Adoption
68
66 stars GitHub
Avertissements
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- The SKILL.md references Biopython 1.87 as the current version, which may become outdated; consider noting that version numbers change and recommend checking the official docs.
- The skill's allowed-tools include broad Bash(python:*) and Bash(uv:*), which is typical for coding skills but could be misused if the agent is compromised; however, this is a configuration concern, not a flaw in the skill itself.
- Quality score needs review
- Permission surface needs review: secrets or environment access, shell or command execution
- GitHub adoption: 66 GitHub stars
- Stars/forks activity: 66 stars, 13 forks; issue activity unavailable in current metadata
- Dependency/runtime risk: command execution surface, credential or environment access
- Permission surface: secrets or environment access, shell or command execution
Méthode
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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