Informe de auditoría del skill
alterlab-biopython Informe de auditoría.
Manipulate biological sequences, parse FASTA/GenBank/PDB files, run phylogenetics, and access NCBI/PubMed programmatically via Biopython (Bio.SeqIO, Bio.Entrez, Bio.PDB, Bio.Blast). Use when scripting custom bioinformatics pipelines, batch-processing sequence files, automating BLAST, or fetching records from Entrez — for quick one-off database lookups use gget, for unified multi-service integration use bioservices. Part of the AlterLab Academic Skills suite.
Trust Score de OpenAgentSkill
Trust Score de OpenAgentSkill
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
Adopción en GitHub
Advertencia48
66 estrellas de GitHub
Actividad de stars/forks
Advertencia48
66 estrellas y 13 forks; la actividad de issues no está disponible en los metadatos actuales
Mantenimiento reciente
Aprobado88
1 meses desde el último push
Claridad de licencia
Aprobado86
MIT
Completitud de README/SKILL.md
Aprobado86
Los metadatos incluyen suficiente contexto de uso y flujo de trabajo
Riesgo de dependencias/runtime
Fallido38
command execution surface, credential or environment access
Disponibilidad de instalación
Aprobado92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-biopython
Seguridad del comando de instalación
Aprobado92
Ruta estándar de paquete o instalación en tiempo de ejecución
Superficie de permisos
Fallido18
secrets or environment access, shell or command execution
Evidencia del repositorio
Aprobado86
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-biopython
Estado de revisión
Info66
Hay datos de revisión por IA disponibles
Resultados comprobados por Agent
Info54
Aún no hay datos de resultados del Agent
Comprobaciones
Revisión de instalación y adopción
Ruta de instalación
92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-biopython
Repositorio
88
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-biopython
Licencia
86
MIT
Mantenimiento
88
1 meses desde el último push
Revisión por IA
55
The SKILL.md references Biopython 1.87 as the current version, which may become outdated; consider noting that version numbers change and recommend checking the official docs.
Completitud de README/SKILL.md
86
Usable description available
Riesgo de dependencias
38
command execution surface, credential or environment access
Seguridad del comando de instalación
92
Ruta estándar de paquete o instalación en tiempo de ejecución
Superficie de permisos
18
secrets or environment access, shell or command execution
Actividad de stars/forks
48
66 estrellas y 13 forks; la actividad de issues no está disponible en los metadatos actuales
Adopción
68
66 estrellas de GitHub
Advertencias
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- The SKILL.md references Biopython 1.87 as the current version, which may become outdated; consider noting that version numbers change and recommend checking the official docs.
- The skill's allowed-tools include broad Bash(python:*) and Bash(uv:*), which is typical for coding skills but could be misused if the agent is compromised; however, this is a configuration concern, not a flaw in the skill itself.
- Quality score needs review
- Permission surface needs review: secrets or environment access, shell or command execution
- GitHub adoption: 66 GitHub stars
- Stars/forks activity: 66 stars, 13 forks; issue activity unavailable in current metadata
- Dependency/runtime risk: command execution surface, credential or environment access
- Permission surface: secrets or environment access, shell or command execution
Método
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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