Skill-Audit-Bericht
alterlab-biopython Audit-Bericht.
Manipulate biological sequences, parse FASTA/GenBank/PDB files, run phylogenetics, and access NCBI/PubMed programmatically via Biopython (Bio.SeqIO, Bio.Entrez, Bio.PDB, Bio.Blast). Use when scripting custom bioinformatics pipelines, batch-processing sequence files, automating BLAST, or fetching records from Entrez — for quick one-off database lookups use gget, for unified multi-service integration use bioservices. Part of the AlterLab Academic Skills suite.
OpenAgentSkill Trust Score
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub-Akzeptanz
Warnung48
66 GitHub-Stars
Star-/Fork-Aktivität
Warnung48
66 Stars und 13 Forks; Issue-Aktivität ist in den aktuellen Metadaten nicht verfügbar
Aktuelle Wartung
Bestanden88
1 Monate seit dem letzten Push
Lizenzklarheit
Bestanden86
MIT
README/SKILL.md-Vollständigkeit
Bestanden86
Metadaten enthalten ausreichend Nutzungs- und Workflow-Kontext
Abhängigkeits-/Laufzeitrisiko
Fehlgeschlagen38
command execution surface, credential or environment access
Installationsverfügbarkeit
Bestanden92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-biopython
Sicherheit des Installationsbefehls
Bestanden92
Standard-Paket- oder Laufzeit-Installationspfad
Berechtigungsumfang
Fehlgeschlagen18
secrets or environment access, shell or command execution
Repository-Nachweis
Bestanden86
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-biopython
Prüfstatus
Info66
KI-Prüfdaten verfügbar
Agent-validierte Ergebnisse
Info54
Noch keine Agent-Ergebnisdaten
Prüfungen
Installations- und Adoptionsprüfung
Installationspfad
92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-biopython
Repository
88
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-biopython
Lizenz
86
MIT
Wartung
88
1 Monate seit dem letzten Push
KI-Prüfung
55
The SKILL.md references Biopython 1.87 as the current version, which may become outdated; consider noting that version numbers change and recommend checking the official docs.
README/SKILL.md-Vollständigkeit
86
Usable description available
Abhängigkeitsrisiko
38
command execution surface, credential or environment access
Sicherheit des Installationsbefehls
92
Standard-Paket- oder Laufzeit-Installationspfad
Berechtigungsumfang
18
secrets or environment access, shell or command execution
Star-/Fork-Aktivität
48
66 Stars und 13 Forks; Issue-Aktivität ist in den aktuellen Metadaten nicht verfügbar
Akzeptanz
68
66 GitHub-Stars
Warnungen
- Dependency or permission surface needs review
- Permission surface may require sandboxing
- The SKILL.md references Biopython 1.87 as the current version, which may become outdated; consider noting that version numbers change and recommend checking the official docs.
- The skill's allowed-tools include broad Bash(python:*) and Bash(uv:*), which is typical for coding skills but could be misused if the agent is compromised; however, this is a configuration concern, not a flaw in the skill itself.
- Quality score needs review
- Permission surface needs review: secrets or environment access, shell or command execution
- GitHub adoption: 66 GitHub stars
- Stars/forks activity: 66 stars, 13 forks; issue activity unavailable in current metadata
- Dependency/runtime risk: command execution surface, credential or environment access
- Permission surface: secrets or environment access, shell or command execution
Methode
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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