Skill audit report
Build, slice, concatenate, read, and write AnnData annotated data matrices (obs, var, X, layers, obsm, uns) — the scverse data STRUCTURE, not an analysis pipeline. Use when creating or wrangling .h5ad/zarr files, managing cell and gene annotations, concatenating batches, or handling layers/obsm/backed-mode; for the QC, normalization, clustering, UMAP, and differential-expression analysis pipeline prefer alterlab-scanpy instead, and for RNA velocity from spliced/unspliced layers prefer alterlab-scvelo instead. Part of the AlterLab Academic Skills suite.
OpenAgentSkill Trust Score
The Trust Score helps an agent decide whether a skill is safe enough to shortlist before installation.
GitHub adoption
WARN48
66 GitHub stars
Stars/forks activity
WARN48
66 stars, 13 forks; issue activity unavailable in current metadata
Recent maintenance
PASS100
13d since push
License clarity
PASS86
MIT
README/SKILL.md completeness
PASS86
Metadata includes enough usage and workflow context
Dependency/runtime risk
FAIL36
command execution surface, credential or environment access
Install availability
PASS92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-anndata
Install command safety
PASS92
standard package or runtime install path
Permission surface
FAIL22
secrets or environment access, shell or command execution
Repository evidence
PASS86
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-anndata
Review status
WARN46
AI review approval is missing
Agent Proven outcomes
INFO54
No agent outcome data yet
Checks
Install path
92
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-anndata
Repository
88
https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/bioinformatics/alterlab-anndata
License
86
MIT
Maintenance
100
13d since push
AI review
55
Review approval is missing
README/SKILL.md completeness
86
Warnings
Method
This report combines public metadata, AI review output, repository freshness, install readiness, OpenAgentSkill events, quality scoring, trust checks, and the agent safety gate. It is not a full source-code security review.
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Dependency risk
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command execution surface, credential or environment access
Install command safety
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standard package or runtime install path
Permission surface
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secrets or environment access, shell or command execution
Stars/forks activity
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66 stars, 13 forks; issue activity unavailable in current metadata
Adoption
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