A comprehensive collection of ready-to-use scientific and research skills for AI agents.

Label Studio is a multi-type data labeling and annotation tool with standardized output format

Xournal++ is a handwriting notetaking software with PDF annotation support. Written in C++ with GTK3, supporting Linux (e.g. Ubuntu, Debian, Arch, SUSE), macOS and Windows 10. Supports pen input from devices such as Wacom Tablets.

Open source annotation tool for machine learning practitioners.

Making Protein folding accessible to all!

Xtreme1 is an all-in-one data labeling and annotation platform for multimodal data training and supports 3D LiDAR point cloud, image, and LLM.

Protein Graph Library

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user mentions Adaptyv, Foundry API, protein binding assays, protein screening experiments, BLI/SPR assays, thermostability assays, or wants to submit protein sequences for experimental characterization. Also trigger when code imports `adaptyv`, `adaptyv_sdk`, or `FoundryClient`, or references `foundry-api-public.adaptyvbio.com`.

PDF++: the most Obsidian-native PDF annotation & viewing tool ever. Comes with optional Vim keybindings.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

🐝 A fast, easy and collaborative open source image annotation tool for teams and individuals.