Alternatives

Squidpy alternatives for AI agents.

Compare similar skills by workflow fit, trust score, quality, GitHub adoption, maintenance, and install readiness.

Current skill

Squidpy

Spatial Single Cell Analysis in Python

85
Quality
87
Trust
577
Stars
#1

Matplotlib

Similarity 133Trust 91Excellent 100

matplotlib: plotting with Python

23K starsJun 16, 2026 pushdata-analysisPythonData Visualization
$ npx skills add matplotlib/matplotlib
#2

Seaborn

Similarity 132Trust 91Excellent 100

Statistical data visualization in Python

14K starsJan 22, 2026 pushdata-analysisPythonData Visualization
$ npx skills add mwaskom/seaborn
#3

Folium

Similarity 130Trust 90Excellent 100

Python Data. Leaflet.js Maps.

7.4K starsJun 15, 2026 pushdata-analysisPythonData Visualization
$ npx skills add python-visualization/folium
#4

Vizro

Similarity 130Trust 93Excellent 100

Vizro is a low-code toolkit for building high-quality data visualization apps.

3.7K starsJun 16, 2026 pushdata-analysisPythonData Visualization
$ npx skills add mckinsey/vizro
#5

Streamlit

Similarity 128Trust 95Excellent 100

Streamlit — A faster way to build and share data apps.

45K starsJun 14, 2026 pushdata-analysisPythonData Analysis
$ npx skills add streamlit/streamlit
#6

Hypertools

Similarity 127Trust 89Excellent 94

A Python toolbox for gaining geometric insights into high-dimensional data

1.9K starsJan 29, 2026 pushdata-analysisPythonData Visualization
$ npx skills add ContextLab/hypertools
#7

Perspective

Similarity 126Trust 98Excellent 100

A data visualization and analytics component, especially well-suited for large and/or streaming datasets.

11K starsJun 5, 2026 pushdata-analysisC++Data Visualization
$ npx skills add perspective-dev/perspective
#8

Deck.Gl

Similarity 126Trust 95Excellent 100

WebGL2 powered visualization framework

14K starsJun 16, 2026 pushdata-analysisTypeScriptData Visualization
$ npx skills add visgl/deck.gl
#9

MultiQC

Similarity 123Trust 96Excellent 100

Aggregate results from bioinformatics analyses across many samples into a single report.

1.5K starsJun 10, 2026 pushdata-analysisJavaScriptData Visualization
$ npx skills add MultiQC/MultiQC
#10

Mercury

Similarity 123Trust 96Excellent 100

The fastest way to turn a Jupyter notebook into a beautiful, shareable web app — no callbacks, no frontend, no rewrite.

4.3K starsJun 12, 2026 pushdata-analysisPythonData Visualization
$ npx skills add mljar/mercury
#11

Electricitymaps Contrib

Similarity 122Trust 96Excellent 100

The open source repository for Electricity Maps data parsers that powers the world's most comprehensive electricity data platform

4.0K starsJun 16, 2026 pushdata-analysisPythonData Visualization
$ npx skills add electricitymaps/electricitymaps-contrib
#12

Preswald

Similarity 122Trust 95Excellent 100

Preswald is a WASM packager for Python-based interactive data apps: bundle full complex data workflows, particularly visualizations, into single files, runnable completely in-browser, using Pyodide, DuckDB, Pandas, and Plotly, Matplotlib, etc. Build dashboards, reports, and notebooks that run offline, load fast, and share like a document.

4.3K starsJun 11, 2026 pushdata-analysisPythonData Visualization
$ npx skills add StructuredLabs/preswald
#13

Matplotlib Cheatsheet

Similarity 122Trust 79Strong 75

Matplotlib 3.1 cheat sheet.

2.9K starsSep 30, 2020 pushdata-analysisPythonData Visualization
$ npx skills add rougier/matplotlib-cheatsheet
#14

Data Science For Beginners

Similarity 122Trust 95Excellent 100

10 Weeks, 20 Lessons, Data Science for All!

36K starsJun 10, 2026 pushdata-analysisJupyter NotebookData Analysis
$ npx skills add microsoft/Data-Science-For-Beginners
#15

Sweetviz

Similarity 122Trust 94Excellent 100

Visualize and compare datasets, target values and associations, with one line of code.

3.1K starsApr 11, 2026 pushdata-analysisPythonData Visualization
$ npx skills add fbdesignpro/sweetviz
#16

Bigfunctions

Similarity 122Trust 84Strong 80

Supercharge BigQuery with BigFunctions

759 starsApr 13, 2026 pushdata-analysisPythonData Visualization
$ npx skills add unytics/bigfunctions

How to choose

When should you switch?

Use an alternative when it has a clearer install path, higher trust score, fresher maintenance, or better platform fit for your current agent stack. Keep Squidpy if it already passes your workflow test and repository review.

Next step

Compare top candidates side by side

Open the compare page, test the install commands in a sandbox, and check each repository before using a skill in production.