Alternatives

Scanpy alternatives for AI agents.

Compare similar skills by workflow fit, trust score, quality, GitHub adoption, maintenance, and install readiness.

Current skill

Scanpy

Single-cell analysis in Python. Scales to >100M cells.

100
Quality
88
Trust
2.5K
Stars
#1

Cesium

Similarity 104Trust 90Excellent 100

An open-source JavaScript library for world-class 3D globes and maps :earth_americas:

15K starsJun 21, 2026 pushgeo-scienceJavaScriptGeospatial
$ npx skills add CesiumGS/cesium
#2

Turf

Similarity 103Trust 88Excellent 100

A modular geospatial engine written in JavaScript and TypeScript

10K starsJun 20, 2026 pushgeo-scienceTypeScriptGeospatial
$ npx skills add Turfjs/turf
#3

Erpnext

Similarity 103Trust 88Excellent 100

Free and Open Source Enterprise Resource Planning (ERP)

36K starsJun 16, 2026 pushgeo-sciencePythonHealth Data
$ npx skills add frappe/erpnext
#4

Tile38

Similarity 102Trust 85Excellent 100

Real-time Geospatial and Geofencing

9.7K starsJun 9, 2026 pushgeo-scienceGoGeospatial
$ npx skills add tidwall/tile38
#5

Pytorch Lightning

Similarity 91Trust 90Excellent 100

Pretrain, finetune ANY AI model of ANY size on 1 or 10,000+ GPUs with zero code changes.

31K starsJun 10, 2026 pushml-automationPythonMachine Learning
$ npx skills add Lightning-AI/pytorch-lightning
#6

Scikit Learn

Similarity 91Trust 88Excellent 100

scikit-learn: machine learning in Python

66K starsJun 17, 2026 pushdata-analysisPythonData Analysis
$ npx skills add scikit-learn/scikit-learn
#7

Keras

Similarity 91Trust 88Excellent 100

Deep Learning for humans

64K starsJun 12, 2026 pushml-automationPythonMachine Learning
$ npx skills add keras-team/keras
#8

Streamlit

Similarity 91Trust 88Excellent 100

Streamlit — A faster way to build and share data apps.

45K starsJun 14, 2026 pushdata-analysisPythonData Analysis
$ npx skills add streamlit/streamlit
#9

Dash

Similarity 91Trust 90Excellent 100

Data Apps & Dashboards for Python. No JavaScript Required.

24K starsJul 17, 2026 pushfinancePythonFinance
$ npx skills add plotly/dash
#10

Recommenders

Similarity 90Trust 88Excellent 100

Best Practices on Recommendation Systems

22K starsJun 14, 2026 pushdevopsPythonKubernetes
$ npx skills add recommenders-team/recommenders
#11

Dvc

Similarity 89Trust 88Excellent 100

🦉 Data Versioning and ML Experiments

16K starsJun 15, 2026 pushcoding-agentsPythonDeveloper Tools
$ npx skills add treeverse/dvc
#12

Darts

Similarity 89Trust 89Excellent 100

A python library for user-friendly forecasting and anomaly detection on time series.

9.4K starsJun 6, 2026 pushml-automationPythonMachine Learning
$ npx skills add unit8co/darts
#13

Imbalanced Learn

Similarity 88Trust 89Excellent 100

A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning

7.1K starsJun 7, 2026 pushdata-analysisPythonData Analysis
$ npx skills add scikit-learn-contrib/imbalanced-learn
#14

Featuretools

Similarity 88Trust 87Excellent 100

An open source python library for automated feature engineering

7.7K starsJun 9, 2026 pushml-automationPythonMachine Learning
$ npx skills add alteryx/featuretools
#15

TabPFN

Similarity 87Trust 84Excellent 96

⚡ TabPFN: Foundation Model for Tabular Data ⚡

7.4K starsJun 16, 2026 pushml-automationPythonMachine Learning
$ npx skills add PriorLabs/TabPFN
#16

Machine Learning For Trading

Similarity 83Trust 85Excellent 100

Code for Machine Learning for Algorithmic Trading, 2nd edition.

19K starsJun 23, 2026 pushfinanceJupyter NotebookFinance
$ npx skills add stefan-jansen/machine-learning-for-trading

How to choose

When should you switch?

Use an alternative when it has a clearer install path, higher trust score, fresher maintenance, or better platform fit for your current agent stack. Keep Scanpy if it already passes your workflow test and repository review.

Next step

Compare top candidates side by side

Open the compare page, test the install commands in a sandbox, and check each repository before using a skill in production.