Anndata alternatives for AI agents.

Single-cell analysis in Python. Scales to >100M cells.

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Official git repository for Biopython (originally converted from CVS)

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Cloud-native genomic dataframes and batch computing

Scripts to download genomes from the NCBI FTP servers

A full spaCy pipeline and models for scientific/biomedical documents.

A comprehensive library for computational molecular biology

Plant phenotyping with image analysis

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

Cutadapt removes adapter sequences from sequencing reads

Open-source bioinformatics components for Dash

Yet another redundant workflow engine

Quickly search, compare, and analyze genomic and metagenomic data sets.

Structural variation caller using third generation sequencing