#1
Official git repository for Biopython (originally converted from CVS)
5.1K starsJun 8, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add biopython/biopythonAlternatives
Plip alternatives for AI agents.
Compare similar skills by workflow fit, trust score, quality, GitHub adoption, maintenance, and install readiness.
Current skill
Plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361
68
Quality
82
Trust
689
Stars
#2
A DSL for data-driven computational pipelines
3.4K starsJun 16, 2026 pushgeo-scienceGroovyBioinformatics
$ npx skills add nextflow-io/nextflow#3
Making Protein folding accessible to all!
2.8K starsJun 15, 2026 pushgeo-scienceJupyter NotebookBioinformatics
$ npx skills add sokrypton/ColabFold#4
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
1.1K starsJun 15, 2026 pushgeo-scienceScalaBioinformatics
$ npx skills add broadinstitute/cromwell#5
Single-cell analysis in Python. Scales to >100M cells.
2.5K starsJun 15, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add scverse/scanpy#6
Foldseek enables fast and sensitive comparisons of large structure sets.
1.2K starsMay 13, 2026 pushgeo-scienceCBioinformatics
$ npx skills add steineggerlab/foldseek#7
Yet another redundant workflow engine
591 starsApr 16, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add insitro/redun#8
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
1.2K starsJun 8, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add scikit-bio/scikit-bio#9
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
1.0K starsJun 14, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add omicverse/omicverse#10
Data intensive science for everyone.
1.8K starsJun 16, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add galaxyproject/galaxy#11
Cloud-native genomic dataframes and batch computing
1.1K starsJun 15, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add hail-is/hail#12
Scripts to download genomes from the NCBI FTP servers
1.1K starsApr 7, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add kblin/ncbi-genome-download#13
A full spaCy pipeline and models for scientific/biomedical documents.
2.0K starsDec 4, 2025 pushgeo-sciencePythonBioinformatics
$ npx skills add allenai/scispacy#14
A comprehensive library for computational molecular biology
958 starsJun 11, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add biotite-dev/biotite#15
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
622 starsMay 5, 2026 pushgeo-scienceJavaBioinformatics
$ npx skills add biojava/biojava#16
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
2.4K starsJun 1, 2026 pushgeo-scienceC++Bioinformatics
$ npx skills add OpenGene/fastpHow to choose
When should you switch?
Use an alternative when it has a clearer install path, higher trust score, fresher maintenance, or better platform fit for your current agent stack. Keep Plip if it already passes your workflow test and repository review.
Next step
Compare top candidates side by side
Open the compare page, test the install commands in a sandbox, and check each repository before using a skill in production.