#1
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
1.1K starsMar 17, 2026 pushgeo-scienceScalaBioinformatics
$ npx skills add bigdatagenomics/adamAlternatives
CircosJS alternatives for AI agents.
Compare similar skills by workflow fit, trust score, quality, GitHub adoption, maintenance, and install readiness.
Current skill
CircosJS
d3 library to build circular graphs
74
Quality
82
Trust
525
Stars
#2
Official git repository for Biopython (originally converted from CVS)
5.1K starsJun 8, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add biopython/biopython#3
A DSL for data-driven computational pipelines
3.4K starsJun 16, 2026 pushgeo-scienceGroovyBioinformatics
$ npx skills add nextflow-io/nextflow#4
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
2.4K starsJun 1, 2026 pushgeo-scienceC++Bioinformatics
$ npx skills add OpenGene/fastp#5
Making Protein folding accessible to all!
2.8K starsJun 15, 2026 pushgeo-scienceJupyter NotebookBioinformatics
$ npx skills add sokrypton/ColabFold#6
Single-cell analysis in Python. Scales to >100M cells.
2.5K starsJun 15, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add scverse/scanpy#7
MMseqs2: ultra fast and sensitive search and clustering suite
2.1K starsJun 15, 2026 pushgeo-scienceCBioinformatics
$ npx skills add soedinglab/MMseqs2#8
A versatile pairwise aligner for genomic and spliced nucleotide sequences
2.2K starsMay 19, 2026 pushgeo-scienceCBioinformatics
$ npx skills add lh3/minimap2#9
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
1.2K starsJun 8, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add scikit-bio/scikit-bio#10
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
1.6K starsJun 16, 2026 pushgeo-scienceGoBioinformatics
$ npx skills add shenwei356/seqkit#11
Gene cluster comparison figure generator
643 starsDec 22, 2025 pushgeo-sciencePythonBioinformatics
$ npx skills add gamcil/clinker#12
Conda recipes for the bioconda channel.
1.8K starsJun 16, 2026 pushgeo-scienceShellBioinformatics
$ npx skills add bioconda/bioconda-recipes#13
Official code repository for GATK versions 4 and up
2.0K starsJun 16, 2026 pushgeo-scienceJavaBioinformatics
$ npx skills add broadinstitute/gatk#14
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
1.1K starsJun 15, 2026 pushgeo-scienceScalaBioinformatics
$ npx skills add broadinstitute/cromwell#15
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
1.0K starsJun 14, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add omicverse/omicverse#16
Data intensive science for everyone.
1.8K starsJun 16, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add galaxyproject/galaxyHow to choose
When should you switch?
Use an alternative when it has a clearer install path, higher trust score, fresher maintenance, or better platform fit for your current agent stack. Keep CircosJS if it already passes your workflow test and repository review.
Next step
Compare top candidates side by side
Open the compare page, test the install commands in a sandbox, and check each repository before using a skill in production.