DnaFeaturesViewer alternatives for AI agents.

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Gene cluster comparison figure generator

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Scripts to download genomes from the NCBI FTP servers

A full spaCy pipeline and models for scientific/biomedical documents.

A comprehensive library for computational molecular biology

Plant phenotyping with image analysis

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Cutadapt removes adapter sequences from sequencing reads

Open-source bioinformatics components for Dash

Official git repository for Biopython (originally converted from CVS)

Single-cell analysis in Python. Scales to >100M cells.

Cloud-native genomic dataframes and batch computing

Biostar Q&A

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Tools to process and analyze deep sequencing data.