#1
Unix, R and python tools for genomics and data science
1.4K starsAug 25, 2025 pushgeo-scienceShellBioinformatics
$ npx skills add crazyhottommy/getting-started-with-genomics-tools-and-resourcesAlternatives
Bioconda Recipes alternatives for AI agents.
Compare similar skills by workflow fit, trust score, quality, GitHub adoption, maintenance, and install readiness.
Current skill
Bioconda Recipes
Conda recipes for the bioconda channel.
100
Quality
89
Trust
1.8K
Stars
#2
Making Protein folding accessible to all!
2.8K starsJun 15, 2026 pushgeo-scienceJupyter NotebookBioinformatics
$ npx skills add sokrypton/ColabFold#3
A versatile pairwise aligner for genomic and spliced nucleotide sequences
2.2K starsMay 19, 2026 pushgeo-scienceCBioinformatics
$ npx skills add lh3/minimap2#4
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
1.2K starsJun 8, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add scikit-bio/scikit-bio#5
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
1.0K starsJun 14, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add omicverse/omicverse#6
Data intensive science for everyone.
1.8K starsJun 16, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add galaxyproject/galaxy#7
Foldseek enables fast and sensitive comparisons of large structure sets.
1.2K starsMay 13, 2026 pushgeo-scienceCBioinformatics
$ npx skills add steineggerlab/foldseek#8
A cross-platform command-line tool for executing jobs in parallel
1.1K starsApr 8, 2026 pushgeo-scienceGoBioinformatics
$ npx skills add shenwei356/rush#9
A full spaCy pipeline and models for scientific/biomedical documents.
2.0K starsDec 4, 2025 pushgeo-sciencePythonBioinformatics
$ npx skills add allenai/scispacy#10
A comprehensive library for computational molecular biology
958 starsJun 11, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add biotite-dev/biotite#11
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
895 starsJun 3, 2026 pushgeo-scienceCythonBioinformatics
$ npx skills add pysam-developers/pysam#12
Specification for the Workflow Description Language (WDL).
852 starsJun 15, 2026 pushgeo-scienceBioinformaticsClaude Code
$ npx skills add openwdl/wdl#13
Plant phenotyping with image analysis
798 starsJun 15, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add danforthcenter/plantcv#14
A fast and sensitive gapped read aligner
794 starsJun 1, 2026 pushgeo-scienceC++Bioinformatics
$ npx skills add BenLangmead/bowtie2#15
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
783 starsMay 31, 2026 pushgeo-scienceC++Bioinformatics
$ npx skills add chhylp123/hifiasm#16
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
753 starsJun 15, 2026 pushgeo-sciencePythonBioinformatics
$ npx skills add scverse/PyDESeq2How to choose
When should you switch?
Use an alternative when it has a clearer install path, higher trust score, fresher maintenance, or better platform fit for your current agent stack. Keep Bioconda Recipes if it already passes your workflow test and repository review.
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