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Designs settings and policy layers for coding-agent runtimes. Use when modeling source precedence, managed policy, env controls, or runtime settings validation.
Designs settings and policy layers for coding-agent runtimes. Use when modeling source precedence, managed policy, env controls, or runtime settings validation.
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Use this skill to design or review the settings and policy layer of a coding-agent runtime: settings sources, precedence, managed policy, validation, safe environment handling, and runtime application of settings changes.
This skill owns configuration and policy architecture for coding-agent runtimes. For project memory in AGENTS.md or CLAUDE.md, use ../agents-memory/SKILL.md.
settings sources
defaults + managed policy + user + project + local + flags + env
|
v
precedence merge
deterministic order + source provenance + plugin-only restrictions
|
v
validation
schema + forbidden keys + unsafe env + unknown options
|
v
runtime application
provider policy + tools + permissions + plugins + UI + cache invalidation
|
v
audit record
effective settings without secrets
| Question | Read | Outcome |
|---|---|---|
| How should settings sources and policy precedence work? | references/settings-source-precedence-and-managed-policy.md | Source model, merge order, managed policy, plugin-only restrictions |
| How should settings be validated and applied safely? | references/settings-validation-and-safe-runtime-application.md | Schema validation, invalid-rule handling, safe env controls, runtime re-application |
| What are the exact override examples for each settings layer? | references/settings-precedence-table.md | Full precedence table: managed > CLI flags > local > project > user, with concrete examples and cache invalidation |
| Which sources can enable plugin surfaces? | references/plugin-only-restriction-recipes.md | Trust-class recipes for locking, scoping, and logging plugin-surface activations |
| How is ToolSearch gated by settings policy? | references/deferred-tool-policy-layer.md | Settings keys, policy decision flow, and interaction with tool-pool assembly |
| How does OpenAI Codex separate config layers from managed requirements? | references/openai-codex-managed-config-and-requirements.md | Layer stack, requirements constraints, managed-hooks-only mode, debug surfaces |
| Need | Use Instead |
|---|---|
| Broader coding-agent architecture | ../ai-coding-agents/SKILL.md |
| Tool approval and permission modes | ../ai-coding-agents-permissions/SKILL.md |
| Plugin package architecture | ../ai-coding-agents-plugins/SKILL.md |
| AGENTS.md or CLAUDE.md repo memory | ../agents-memory/SKILL.md |
| Generic config or schema design outside agent runtimes | ../software-devtools/SKILL.md |
Verified against code.claude.com/docs/en/settings and code.claude.com/docs/en/hooks on 2026-07-11. The Claude Code precedence order is the reference implementation for the settings-precedence-table.md model in this skill:
managed (highest, cannot be overridden)
> CLI flags (session-only)
> .claude/settings.local.json (gitignored; allow rules apply without a trust dialog)
> .claude/settings.json (project, checked in; requires the trust dialog)
> ~/.claude/settings.json (user, lowest)
The most common audit mistake is inverting the last three: local is the most specific and highest-precedence editable file, not the least. A clean ~/.claude/settings.json changes nothing in a repo that carries a conflicting .claude/settings.local.json.
cleanupPeriodDays (any editable scope; default 30, minimum 1) controls how many days of session files and other application data Claude Code deletes at startup. Setting it to 0 is a validation error, not "disable cleanup." When auditing a fleet for stale-session accumulation or unexpected data loss, check this key before assuming a bug — 30 days is the shipped default and a lower value elsewhere is a deliberate override, not drift.
These keys are honored only when set in managed/enterprise policy; the same key in user or project settings is silently ignored. This is the strongest lockdown class — verify this distinction before telling an operator "just set X in your project settings," because for this table that advice is wrong.
| Key | Type | Effect |
|---|---|---|
allowManagedPermissionRulesOnly | boolean | User/project permission rules (allow/ask/deny) are ignored; only managed-settings rules apply |
allowManagedHooksOnly | boolean | Only managed hooks, SDK hooks, and plugin hooks force-enabled via managed enabledPlugins load; user/project/other-plugin hooks are blocked |
allowManagedMcpServersOnly | boolean | Only the managed allowedMcpServers allowlist is respected; deniedMcpServers still merges from all sources on top of it |
claudeMd | string | Organization-managed CLAUDE.md-style instructions injected as memory; ignored if set anywhere other than managed/policy settings |
disableSideloadFlags | boolean | Rejects --plugin-dir, --plugin-url, --agents, and --mcp-config CLI flags at startup — closes the loophole where a user could otherwise sideload past strictKnownMarketplaces for a single run |
forceRemoteSettingsRefresh | boolean | Blocks CLI startup until remote managed settings are freshly fetched; the CLI exits on fetch failure rather than falling back to a cached o |
name: ai-coding-agents-settings-policy description: "Designs settings and policy layers for coding-agent runtimes. Use when modeling source precedence, managed policy, env controls, or runtime settings validation." compatibility: Portable core. Works on Claude Code and Codex. version: "1.1" last_validated: 2026-07-11
---
name: ai-coding-agents-settings-policy
description: "Designs settings and policy layers for coding-agent runtimes. Use when modeling source precedence, managed policy, env controls, or runtime settings validation."
compatibility: Portable core. Works on Claude Code and Codex.
version: "1.1"
last_validated: 2026-07-11
---
# AI Coding Agents Settings Policy
Use this skill to design or review the settings and policy layer of a coding-agent runtime: settings sources, precedence, managed policy, validation, safe environment handling, and runtime application of settings changes.
This skill owns configuration and policy architecture for coding-agent runtimes. For project memory in `AGENTS.md` or `CLAUDE.md`, use [`../agents-memory/SKILL.md`](../agents-memory/SKILL.md).
## ASCII Flow
```text
settings sources
defaults + managed policy + user + project + local + flags + env
|
v
precedence merge
deterministic order + source provenance + plugin-only restrictions
|
v
validation
schema + forbidden keys + unsafe env + unknown options
|
v
runtime application
provider policy + tools + permissions + plugins + UI + cache invalidation
|
v
audit record
effective settings without secrets
```
## Quick Reference
| Question | Read | Outcome |
|----------|------|---------|
| How should settings sources and policy precedence work? | [`references/settings-source-precedence-and-managed-policy.md`](references/settings-source-precedence-and-managed-policy.md) | Source model, merge order, managed policy, plugin-only restrictions |
| How should settings be validated and applied safely? | [`references/settings-validation-and-safe-runtime-application.md`](references/settings-validation-and-safe-runtime-application.md) | Schema validation, invalid-rule handling, safe env controls, runtime re-application |
| What are the exact override examples for each settings layer? | [`references/settings-precedence-table.md`](references/settings-precedence-table.md) | Full precedence table: managed > CLI flags > local > project > user, with concrete examples and cache invalidation |
| Which sources can enable plugin surfaces? | [`references/plugin-only-restriction-recipes.md`](references/plugin-only-restriction-recipes.md) | Trust-class recipes for locking, scoping, and logging plugin-surface activations |
| How is ToolSearch gated by settings policy? | [`references/deferred-tool-policy-layer.md`](references/deferred-tool-policy-layer.md) | Settings keys, policy decision flow, and interaction with tool-pool assembly |
| How does OpenAI Codex separate config layers from managed requirements? | [`references/openai-codex-managed-config-and-requirements.md`](references/openai-codex-managed-config-and-requirements.md) | Layer stack, requirements constraints, managed-hooks-only mode, debug surfaces |
## When To Use
- Design a settings system for a coding-agent CLI or runtime
- Separate user, project, local, flag, and managed policy sources
- Review how managed settings should override user configuration
- Define which environment variables or customization surfaces are safe to accept
- Apply runtime settings changes without restarting the whole process
## Use Other Skills
| Need | Use Instead |
|------|-------------|
| Broader coding-agent architecture | [`../ai-coding-agents/SKILL.md`](../ai-coding-agents/SKILL.md) |
| Tool approval and permission modes | [`../ai-coding-agents-permissions/SKILL.md`](../ai-coding-agents-permissions/SKILL.md) |
| Plugin package architecture | [`../ai-coding-agents-plugins/SKILL.md`](../ai-coding-agents-plugins/SKILL.md) |
| AGENTS.md or CLAUDE.md repo memory | [`../agents-memory/SKILL.md`](../agents-memory/SKILL.md) |
| Generic config or schema design outside agent runtimes | [`../software-devtools/SKILL.md`](../software-devtools/SKILL.md) |
## Default Workflow
1. **Define source layers.** Separate user, shared project, local gitignored, CLI-flag, and managed-policy sources.
2. **Freeze precedence.** Document one merge order and keep it consistent across disk reads, UI display, and runtime application.
3. **Make managed policy authoritative.** Policy layers should override user-controlled settings and bypass local customization where required.
4. **Validate at the boundary.** Parse, coerce, and validate settings before they mutate runtime state.
5. **Fail soft on invalid fragments.** Preserve the file on disk, but ignore invalid pieces when safe to do so.
6. **Protect dangerous env and customization surfaces.** Whitelist what can be applied automatically; strip or gate anything that could redirect providers or execute shell code.
7. **Separate cache tiers.** Keep merged settings, per-source reads, and parsed-file caches distinct so invalidation is targeted and explainable.
8. **Apply changes through one runtime path.** Re-read settings, snapshot hooks or dependent callbacks, reload dependent subsystems, and update app state through a single function.
9. **Test hostile cases.** Cover malformed JSON, invalid permission rules, drop-in conflicts, managed overrides, and live settings-change notifications.
## Host Rules
- Keep source precedence explicit and stable.
- Always include managed-policy and CLI-flag sources even when users restrict editable sources.
- Distinguish editable sources from read-only policy and flag overlays.
- Prefer schema validation plus targeted filtering over all-or-nothing rejection when individual rules are bad.
- Keep dangerous environment settings and shell-like helper values behind explicit trust gates.
- Apply settings changes by recomputing derived runtime state, not by mutating scattered subsystems in place.
- Treat plugin-only customization policy as source-aware. Not every settings source is equally trusted to enable plugin surfaces.
- Sanitize persisted permission rules after reload before they become active state.
## Build Order
1. Define settings sources and immutable precedence.
2. Define the canonical merged schema and validation path.
3. Add managed-policy and CLI-flag overlays.
4. Add dangerous-surface filtering for env and helper values.
5. Split merged, per-source, and parsed-file caches.
6. Implement one runtime re-application path.
7. Add reload sequencing for caches, hook snapshots, plugins, and UI state.
## Core Invariants
- Precedence must be identical in disk reads, UI views, and runtime application.
- Managed policy overrides user settings even when users can edit local files.
- Invalid fragments should not corrupt valid configuration.
- Dangerous customization surfaces require explicit trust rules.
- Runtime state should be recomputed from merged settings, not patched piecemeal.
- Cache invalidation must respect which layer changed: parsed file, source layer, or merged result.
## Failure Modes
- Different parts of the runtime seeing different precedence orders.
- Managed drop-ins loading after user config but before flags in one code path and not another.
- Invalid permission rules poisoning the whole settings load.
- Reload side effects applying out of order across cache resets, hooks, and app state.
- Plugin-only restrictions differing by source because trust class was lost during merge.
- Safe-looking env overrides redirecting providers or shell helpers unexpectedly.
## Minimal Viable Version
- One source-precedence table.
- One merged schema and validation pass.
- One managed-policy overlay.
- One filter for dangerous env or helper surfaces.
- One source-aware trust rule for plugin-only or privileged customization.
- One central function that reapplies derived runtime state after settings change.
## What Strong Implementations Add
- Read-only versus editable source distinctions in UI and runtime.
- Plugin-only customization restrictions.
- Fine-grained invalid-fragment filtering instead of all-or-nothing rejection.
- Distinct caches for parsed files, per-source layers, and merged effective settings.
- Explicit sequencing for hook snapshots, cache resets, and state reapplication.
- Auditability explaining which source won for any effective value.
## Known Traps
- Letting different subsystems invent their own precedence rules and ending up with settings that disagree between runtime, UI, and policy enforcement.
- Treating environment overrides as harmless configuration even when they bypass managed policy or expand the trust boundary.
- Reapplying one changed field in place instead of rebuilding the derived state that depends on source layering, hooks, and permissions.
- Using one shared cache for parse results, merged settings, and source-specific state, which makes invalidation unreliable.
- Hiding policy wins from the effective-settings view and making debugging impossible for operators.
## Common Anti-Patterns
- Letting every subsystem define its own precedence order.
- Treating flags, policy, and user files as one merge layer.
- Reapplying only the changed field instead of rebuilding derived state.
- Using one undifferentiated settings cache for parse results, source layers, and merged output.
- Accepting arbitrary env overrides because they are “just config.”
- Hiding managed-policy wins from the effective settings view.
## Claude Code: Precedence, Managed Policy, and Cleanup (2026, web-verified)
Verified against `code.claude.com/docs/en/settings` and `code.claude.com/docs/en/hooks` on 2026-07-11. The Claude Code precedence order is the reference implementation for the `settings-precedence-table.md` model in this skill:
```
managed (highest, cannot be overridden)
> CLI flags (session-only)
> .claude/settings.local.json (gitignored; allow rules apply without a trust dialog)
> .claude/settings.json (project, checked in; requires the trust dialog)
> ~/.claude/settings.json (user, lowest)
```
The most common audit mistake is inverting the last three: local is the **most** specific and highest-precedence editable file, not the least. A clean `~/.claude/settings.json` changes nothing in a repo that carries a conflicting `.claude/settings.local.json`.
`cleanupPeriodDays` (any editable scope; default `30`, minimum `1`) controls how many days of session files and other application data Claude Code deletes at startup. Setting it to `0` is a validation error, not "disable cleanup." When auditing a fleet for stale-session accumulation or unexpected data loss, check this key before assuming a bug — 30 days is the shipped default and a lower value elsewhere is a deliberate override, not drift.
### Managed-settings-only keys
These keys are honored **only** when set in managed/enterprise policy; the same key in user or project settings is silently ignored. This is the strongest lockdown class — verify this distinction before telling an operator "just set X in your project settings," because for this table that advice is wrong.
| Key | Type | Effect |
|-----|------|--------|
| `allowManagedPermissionRulesOnly` | boolean | User/project permission rules (`allow`/`ask`/`deny`) are ignored; only managed-settings rules apply |
| `allowManagedHooksOnly` | boolean | Only managed hooks, SDK hooks, and plugin hooks force-enabled via managed `enabledPlugins` load; user/project/other-plugin hooks are blocked |
| `allowManagedMcpServersOnly` | boolean | Only the managed `allowedMcpServers` allowlist is respected; `deniedMcpServers` still merges from all sources on top of it |
| `claudeMd` | string | Organization-managed CLAUDE.md-style instructions injected as memory; ignored if set anywhere other than managed/policy settings |
| `disableSideloadFlags` | boolean | Rejects `--plugin-dir`, `--plugin-url`, `--agents`, and `--mcp-config` CLI flags at startup — closes the loophole where a user could otherwise sideload past `strictKnownMarketplaces` for a single run |
| `forceRemoteSettingsRefresh` | boolean | Blocks CLI startup until remote managed settings are freshly fetched; the CLI exits on fetch failure rather than falling back to a cached oSkill source recorded
Skill instructions are recorded. This is not a runtime test, safety guarantee or compatibility certification.
Review before install: Avoid automatic install
License: MIT
Repository metadata and review signals are advisory. Popularity, source discovery and successful execution are different facts.
Version reported in registry metadata; check source releases before relying on it.
Quality
66/100
Promising
Trust
56/100
This page exposes the same decision, trust, audit, use-case, and install signals through the Registry API, so agents can rank this skill without scraping the UI.
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"Dependency or permission surface needs review",
"Permission surface may require sandboxing",
"Financial research output is not financial advice; require human review before any live investment decision"
],
"agent_contract": {
"task_input": "Use ai-coding-agents-settings-policy in an agent workflow",
"recommended_action": "Do not auto-install. Inspect the source, dependencies, and permission surface first.",
"install_policy": "block",
"minimum_review_before_use": [
"Trust: 64/100 Manual review",
"Audit: 74/100 Needs review",
"Safety: 30/100 Avoid automatic install",
"Review repository, license, install command, and permission surface before production use."
],
"expected_agent_output": {
"selected_skill": "vasilyu1983-ai-coding-agents-settings-policy (ai-coding-agents-settings-policy)",
"install_command": "npx skills add vasilyu1983/AI-Agents-public --skill ai-coding-agents-settings-policy",
"risk_summary": "Needs review; Blocked for auto-install; Review before production",
"verification_result": "Report the smallest successful task, files touched, warnings, and any missing setup."
}
},
"outcome_feedback": {
"endpoint": "https://www.openagentskill.com/api/agent/outcome",
"method": "POST",
"requires_resolve_event_id": true,
"event_id_source": "Use install_receipt.outcome_feedback.event_id or feedback.event_id returned by /api/agent/resolve for the current task.",
"expected_outcomes": [
"success",
"failed",
"not_relevant",
"blocked_by_risk",
"setup_required"
],
"payload_template": {
"event_id": "<install_receipt.outcome_feedback.event_id or feedback.event_id from /api/agent/resolve>",
"skill_slug": "vasilyu1983-ai-coding-agents-settings-policy",
"task": "Use ai-coding-agents-settings-policy in an agent workflow",
"agent": "codex",
"outcome": "success",
"install_used": true,
"risk_blocked": false,
"setup_required": false,
"task_success": true,
"output_quality": 4,
"error_type": null,
"human_review_required": false,
"workspace": "sandbox",
"time_to_useful_ms": 120000,
"notes": "Report the smallest successful task, setup friction, files touched, and risk notes."
}
},
"endpoints": {
"web": "https://www.openagentskill.com/skills/vasilyu1983-ai-coding-agents-settings-policy",
"api": "https://www.openagentskill.com/api/agent/skills/vasilyu1983-ai-coding-agents-settings-policy",
"audit": "https://www.openagentskill.com/skills/vasilyu1983-ai-coding-agents-settings-policy/audit",
"eval": "https://www.openagentskill.com/api/agent/evals?slug=vasilyu1983-ai-coding-agents-settings-policy&task=Use%20ai-coding-agents-settings-policy%20in%20an%20agent%20workflow&max_risk=medium",
"resolve": "https://www.openagentskill.com/api/agent/resolve?task=Use%20ai-coding-agents-settings-policy%20in%20an%20agent%20workflow&agent=codex&max_risk=medium",
"receipt": "https://www.openagentskill.com/api/agent/receipt?task=Use%20ai-coding-agents-settings-policy%20in%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text",
"install": "https://www.openagentskill.com/api/skills/vasilyu1983-ai-coding-agents-settings-policy/install",
"manifest": "https://www.openagentskill.com/api/registry/manifest/vasilyu1983-ai-coding-agents-settings-policy"
}
}Listing source
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Do not auto-install
Audit
74/100
Needs review
Copies are not installs. Installation counts require a reported successful installation; they are not a blanket quality guarantee.