Bioinformatics One Liners
Bioinformatics one liners from Ming Tang
Supply asset profile
Coding and developer agents
Code review, repo analysis, testing, CI, GitHub, DevOps, and developer workflow skills.
Scenario
GitHub automation
I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.
Agent fit
Claude Code + CLI + Codex
Codex, Claude Code, Cursor, CLI, or custom agents.
Install
Ready
npx skills add crazyhottommy/bioinformatics-one-liners
Maintenance
stale
6y since push
Risk
Needs review
Repository appears stale
GitHub quality
500
53/100 quality · 70/100 trust
Coverage tags
Review notes
Repository appears stale · Repository looks stale
Agent adoption scorecard
Trust, audit, and install readiness at a glance
These scores combine public repository metadata, OpenAgentSkill review signals, maintenance freshness, and install readiness. They are a shortlist signal, not a replacement for human review.
Quality
Needs reviewInspect the repository carefully before adding it to an agent workflow.
Trust
Manual reviewPotentially useful, but at least one trust signal needs human inspection.
Audit
Needs reviewInstall readiness, security metadata, maintenance, and adoption risk.
Agent safety v2
37/100 · Avoid automatic install
Sparse or mixed signals. Useful for discovery, but not for autonomous installation.
Test manually in an isolated workspace and compare against safer alternatives.
high
Shell or command execution
Skill metadata references terminal, CLI, shell, subprocess, or command execution workflows.
medium
Network access
Skill likely fetches remote pages, APIs, repositories, or external services.
medium
Filesystem access
Skill may read or write project files, documents, generated artifacts, or local workspace state.
- High-risk permission hints: Shell or command execution
- Repository appears stale
Install targets
Install this skill in your agent workflow
Copy the registry command or an agent-specific install prompt for Codex, Claude Code, and Cursor.
OpenAgentSkill CLI
Use the registry command when your workflow supports the OpenAgentSkill installer.
$ npx skills add crazyhottommy/bioinformatics-one-linersAgent resolve plan
Let an agent verify fit before installing.
The Resolve API returns the selected skill, alternatives, safety policy, audit notes, install target, and copy-paste prompt an agent can follow without scraping this page.
Resolve JSON
/api/agent/resolve?task=Use%20Bioinformatics%20One%20Liners%20for%20an%20agent%20workflow&agent=codex&max_risk=medium
Resolve text
/api/agent/resolve?task=Use%20Bioinformatics%20One%20Liners%20for%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text
Install handoff
/api/skills/crazyhottommy-bioinformatics-one-liners/install
Agent should check
- Task fit and alternatives from Resolve API.
- Audit score, trust score, and safety policy warnings.
- Install target compatibility for Codex, Claude Code, Cursor, or CLI.
Copy prompt
Task: Use Bioinformatics One Liners in this workspace.
Resolve first: https://www.openagentskill.com/api/agent/resolve?task=Use%20Bioinformatics%20One%20Liners%20for%20an%20agent%20workflow&agent=codex&max_risk=medium
Review install handoff: https://www.openagentskill.com/api/skills/crazyhottommy-bioinformatics-one-liners/install
Install command: npx skills add crazyhottommy/bioinformatics-one-liners
Before running it, summarize audit warnings, required permissions, and the fallback skill if install is risky.Agent handoff
Give an agent the install path, not another directory page.
Use the public install endpoint to fetch the command, safety checklist, target prompts, and canonical links for this skill.
Install handoff
/api/skills/crazyhottommy-bioinformatics-one-liners/install
LLM text format
/api/skills/crazyhottommy-bioinformatics-one-liners/install?format=text
Find alternatives
/api/skills/search?q=Bioinformatics%20One%20Liners&limit=3
Agent prompt
Use Bioinformatics One Liners for this task. Review https://www.openagentskill.com/api/skills/crazyhottommy-bioinformatics-one-liners/install, then install with: npx skills add crazyhottommy/bioinformatics-one-linersRegistry metadata
Agent-readable profile for automatic skill selection.
This page exposes the same decision, trust, audit, use-case, and install signals through the Registry API, so agents can rank this skill without scraping the UI.
Manifest
/api/registry/manifest/crazyhottommy-bioinformatics-one-liners
LLM text
/api/registry/manifest/crazyhottommy-bioinformatics-one-liners?format=text
Install alias
/api/registry/install/crazyhottommy-bioinformatics-one-liners
Recommend
/api/registry/recommend?task=Use%20Bioinformatics%20One%20Liners%20in%20an%20agent%20workflow&limit=3
Agent fit
GitHub automation
Use-case tags
Platforms
Bioinformatics, Claude Code
Audit report
Needs review · 65/100
Review install readiness, maintenance, trust, quality, and metadata warnings before adding this skill to an agent workflow.
Agent decision cockpit
Needs validation for GitHub automation
Do a manual repository review before adding this to an agent workflow.
Role in stack
Needs validation
Primary fit
GitHub automation
Trust label
Needs manual review
Install path
Command ready
Use when
- GitHub automation workflows
- Claude Code teams
- teams that value GitHub adoption signals
Evidence
- 500 GitHub stars
- install command or GitHub repo available
- 53/100 quality profile
Review first
- Repository looks stale
- No OpenAgentSkill engagement data yet
Implementation path
- 1Install it in a sandbox agent and run one GitHub automation task end to end.
- 2Compare output quality, latency, and failure behavior against at least one alternative.
- 3Promote it into production only after reviewing repository permissions, license, and maintenance signals.
Trust profile
Manual review
Potentially useful, but at least one trust signal needs human inspection.
GitHub adoption
INFO500 GitHub stars
Recent maintenance
FIX6y since push
License clarity
PASSMIT
README/SKILL.md completeness
INFOPublic metadata needs stronger README/SKILL.md context
Good signals
- AI review approved
- Install path is available
- Repository evidence is available
- Meaningful GitHub adoption signal
Review before install
- Repository looks stale
- Quality score needs review
- Recent maintenance: 6y since push
Recommended action
Inspect the repository, license, and recent activity before connecting it to agent workflows.
Quality profile
Needs review candidate for agent workflows
Inspect the repository carefully before adding it to an agent workflow.
Workflow fit
Use this skill in these scenarios
Manage repositories
GitHub automation
I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.
Build and ship code
Coding agents
I need a coding agent that can understand a repository, edit code, and review pull requests.
Search private knowledge
RAG and knowledge
I need my agent to build a RAG workflow over documents and retrieve reliable context.
Stack fit
Add it to a complete workflow
Turn skills into distribution
Content growth agent
A stack for turning newly indexed skills into SEO briefs, social drafts, comparison pages, and reusable publishing workflows.
Inspect, patch, and verify code
Coding review agent
A stack for software agents that inspect repositories, review pull requests, generate tests, and turn findings into shippable patches.
Ingest, retrieve, and cite
RAG knowledge base
A stack for document-heavy agents that ingest files, create searchable knowledge, retrieve relevant context, and answer with grounded sources.
Alternative shortlist
Compare before you install
Similar skills in this category, ranked with the same readiness and quality signals.
Erpnext
Free and Open Source Enterprise Resource Planning (ERP)
Biopython
Official git repository for Biopython (originally converted from CVS)
Nextflow
A DSL for data-driven computational pipelines
ColabFold
Making Protein folding accessible to all!
Overview
Bioinformatics one liners from Ming Tang
Imported by the skill-only GitHub discovery pipeline because it matches agent skill, automation, domain workflow, RAG, document-processing, data, finance, security, or developer-tool signals. Protocol-server projects are excluded from automated imports.
Platform Compatibility
Technical Details
- Version
- 1.0.0
- License
- MIT
- Last Updated
- 6/16/2026
- Published
- 6/16/2026
Frameworks & Tools
Decision snapshot
Needs validation
500 GitHub stars
Audit Snapshot
Install and adoption review
- Security
- 94/100
- Maintenance
- 20/100
- Install
- 92/100
Growth loop
Share this skill
Scenario-led draft for Bioinformatics One Liners, with the OpenAgentSkill Update theme and canonical URL.
OpenAgentSkill Update Today: Bioinformatics One Liners Use it when you want your coding agent to carry more repo context and ship repet... 500 stars - geo-science Link: https://www.openagentskill.com/skills/crazyhottommy-bioinformatics-one-liners?ref=x #AIAgents #OpenAgentSkill
Optional reply with install command
Link for Bioinformatics One Liners: https://www.openagentskill.com/skills/crazyhottommy-bioinformatics-one-liners?ref=x Install: npx skills add crazyhottommy/bioinformatics-one-liners
Listing source
Community indexed
This listing was indexed from public sources and is not marked official until a maintainer claim is approved.
- Creator
- crazyhottommy
- Indexed by
- OpenAgentSkill community index
Attribution links to the public repository or creator profile. Creators can claim the listing to update ownership signals.
Claim this skillOwner claim
Claim this skill listing
This community indexed listing is attributed to crazyhottommy but is not marked official yet. Claim it to add a verified owner signal and make future launch, install, and audit updates easier to trust.
README badge
Add this badge to your GitHub README to show the listing, trust score, and install handoff.
[](https://www.openagentskill.com/skills/crazyhottommy-bioinformatics-one-liners)Author
crazyhottommy
@crazyhottommy
Platform Fit
Health Signals
- GitHub stars
- 500
- Quality score
- 38/100
- Last GitHub push
- Oct 4, 2020
- Framework hints
- 1
- OpenAgentSkill views
- 0
- Install copies
- 0
- Outbound clicks
- 0
Community Signal
Share whether this skill looks useful for your agent workflow. Aggregated feedback improves rankings over time.
Trust & Safety
Manual review
- GitHub adoption500 GitHub starsINFO
- Recent maintenance6y since pushFIX
- License clarityMITPASS
- README/SKILL.md completenessPublic metadata needs stronger README/SKILL.md contextINFO
- Dependency riskcommand execution surfaceINFO
- Install availabilitynpx skills add crazyhottommy/bioinformatics-one-linersPASS
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