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MUST USE when reviewing ClickHouse schemas, queries, or configurations. Contains 31 rules that MUST be checked before providing recommendations. Always read relevant rule files and cite specific rules in responses.
MUST USE when reviewing ClickHouse schemas, queries, or configurations. Contains 31 rules that MUST be checked before providing recommendations. Always read relevant rule files and cite specific rules in responses.
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Comprehensive guidance for ClickHouse covering schema design, query optimization, data ingestion, and AI agent connectivity. Contains 31 rules across 4 main categories (schema, query, insert, agent), prioritized by impact.
Official docs: ClickHouse Best Practices
Before answering ClickHouse questions, follow this priority order:
rules/ directoryrule-name..."Why rules take priority: ClickHouse has specific behaviors (columnar storage, sparse indexes, merge tree mechanics) where general database intuition can be misleading. The rules encode validated, ClickHouse-specific guidance.
Before querying ClickHouse, agents must establish a connection and follow the discovery workflow:
rules/agent-connect-mcp.md - Connection setup (MCP + CLI), credential discovery, output format selectionrules/agent-discovery-schema.md - CRITICAL: 7-step schema discovery workflowrules/agent-query-safety.md - CRITICAL: LIMIT, timeouts, progressive explorationEvery agent session should follow this sequence:
agent-connect-mcp)agent-query-safety)If your system dispatches ClickHouse tasks to specialized subagents:
Read these rule files in order:
rules/schema-pk-plan-before-creation.md - ORDER BY is immutablerules/schema-pk-cardinality-order.md - Column ordering in keysrules/schema-pk-prioritize-filters.md - Filter column inclusionrules/schema-types-native-types.md - Proper type selectionrules/schema-types-minimize-bitwidth.md - Numeric type sizingrules/schema-types-lowcardinality.md - LowCardinality usagerules/schema-types-avoid-nullable.md - Nullable vs DEFAULTrules/schema-partition-low-cardinality.md - Partition count limitsrules/schema-partition-lifecycle.md - Partitioning purposeCheck for:
Read these rule files:
rules/query-join-choose-algorithm.md - Algorithm selectionrules/query-join-filter-before.md - Pre-join filteringrules/query-join-use-any.md - ANY vs regular JOINrules/query-index-skipping-indices.md - Secondary index usagerules/schema-pk-filter-on-orderby.md - Filter alignment with ORDER BYCheck for:
Read these rule files:
rules/insert-batch-size.md - Batch sizing requirementsrules/insert-mutation-avoid-update.md - UPDATE alternativesrules/insert-mutation-avoid-delete.md - DELETE alternativesrules/insert-async-small-batches.md - Async insert usagerules/insert-optimize-avoid-final.md - OPTIMIZE TABLE risksCheck for:
Structure your response as follows:
## Rules Checked
- `rule-name-1` - Compliant / Violation found
- `rule-name-2` - Compliant / Violation found
...
## Findings
### Violations
- **`rule-name`**: Description of the issue
- Current: [what the code does]
- Required: [what it should do]
- Fix: [specific correction]
### Compliant
- `rule-name`: Brief note on why it's correct
## Recommendations
[Prioritized list of changes, citing rules]
| Priority | Category | Impact | Prefix | Rule Count |
|---|---|---|---|---|
| 1 | Primary Key Selection | CRITICAL | schema-pk- | 4 |
| 2 | Data Type Selection | CRITICAL | schema-types- | 5 |
| 3 | JOIN Optimization | CRITICAL | query-join- | 5 |
| 4 | Insert Batching | CRITICAL | insert-batch- | 1 |
| 5 | Mutation Avoidance | CRITICAL | insert-mutation- | 2 |
| 6 | Partitioning Strategy | HIGH | schema-partition- | 4 |
| 7 | Skipping Indices | HIGH | query-index- | 1 |
| 8 | Materialized Views | HIGH | query-mv- | 2 |
| 9 | Async Inserts | HIGH | insert-async- | 2 |
| 10 | OPTIMIZE Avoidance | HIGH | insert-optimize- | 1 |
| 11 | JSON Usage | MEDIUM | schema-json- | 1 |
| 12 | Agent Schema Discovery | CRITICAL | agent-discovery- | 1 |
| 13 | Agent Query Safety | CRITICAL | agent-query- | 1 |
| 14 | Agent Connectivity + Formats | HIGH | agent-connect- | 1 |
schema-pk-plan-before-creation - Plan ORDER BY before table creation (immutable)schema-pk-cardinality-order - Order columns low-to-high cardinalityschema-pk-prioritize-filters - Include frequently filtered columnsschema-pk-filter-on-orderby - Query filters must use ORDER BY prefixschema-types-native-types - Use native types, not String for everythingschema-types-minimize-bitwidth - Use smallest numeric type that fitsschema-types-lowcardinality - LowCardinality for <10K unique stringsschema-types-enum - Enum for finite value sets with validationschema-types-avoid-nullable - Avoid Nullable; use DEFAULT insteadschema-partition-low-cardinality - Keep partition count 100-1,000schema-partition-lifecycle - Use partitioning for data lifecycle, not queriesschema-partition-query-tradeoffs - Understand partition pruning trade-offsschema-partition-start-without - Consider starting without partitioningschema-json-when-to-use - JSON for dynamic schemas; typed columns for knownquery-join-choose-algorithm - Select algorithm based on table sizesquery-join-use-any - ANY JOIN when only one match neededquery-join-filter-before - Filter tables before joiningquery-join-consider-alternatives - Dictionaries/denormalization vs JOINquery-join-null-handling - join_use_nulls=0 for default valuesquery-index-skipping-indices - Skipping indices for non-ORDER BY filtersquery-mv-incremental - Incremental MVs for real-time aggregationsquery-mv-refreshable - Refreshable MVs for complex joinsinsert-batch-size - Batch 10K-100K rows per INSERTinsert-async-small-batches - Async inserts for high-frequency small batchesinsert-format-native - Native format for best performanceinsert-mutation-avoid-update - ReplacingMergeTree instead of ALTER UPDATEinsert-mutation-avoid-delete - Lightweight DELETE or DROP PARTITIONinsert-optimize-avoid-final - Let background merges workagent-discovery-schema - Always discover schema before queryingagent-query-safety - LIMIT, timeouts, progressive explorationagent-connect-mcp - MCP + CLI setup, credential discovery, output format selectionThis skill activates when you encounter:
AI agent connecting to ClickHouse (MCP, CLI, HTTP)
Agent workflow design for ClickHouse
Schema discovery or exploration requests
CREATE TABLE statements
ALTER TABLE modifications
ORDER BY or PRIMARY KEY discussions
Data type selection questions
Slow query troubleshooting
JOIN optimization requests
Data ingestion pipeline design
Update/delete strategy questions
ReplacingMergeTree or other specialized engine usage
Partitioning strategy decisions
Each rule file in rules/ contains:
For the complete guide with all rules expanded inline: AGENTS.md
Use AGENTS.md when you need to check multiple rules quickly without reading individual files.
name: clickhouse-best-practices description: MUST USE when reviewing ClickHouse schemas, queries, or configurations. Contains 31 rules that MUST be checked before providing recommendations. Always read relevant rule files and cite specific rules in responses. license: Apache-2.0 metadata: author: ClickHouse Inc version: "0.4.0"
--- name: clickhouse-best-practices description: MUST USE when reviewing ClickHouse schemas, queries, or configurations. Contains 31 rules that MUST be checked before providing recommendations. Always read relevant rule files and cite specific rules in responses. license: Apache-2.0 metadata: author: ClickHouse Inc version: "0.4.0" --- # ClickHouse Best Practices Comprehensive guidance for ClickHouse covering schema design, query optimization, data ingestion, and AI agent connectivity. Contains 31 rules across 4 main categories (schema, query, insert, agent), prioritized by impact. > **Official docs:** [ClickHouse Best Practices](https://clickhouse.com/docs/best-practices) ## IMPORTANT: How to Apply This Skill **Before answering ClickHouse questions, follow this priority order:** 1. **Check for applicable rules** in the `rules/` directory 2. **If rules exist:** Apply them and cite them in your response using "Per `rule-name`..." 3. **If no rule exists:** Use the LLM's ClickHouse knowledge or search documentation 4. **If uncertain:** Use web search for current best practices 5. **Always cite your source:** rule name, "general ClickHouse guidance", or URL **Why rules take priority:** ClickHouse has specific behaviors (columnar storage, sparse indexes, merge tree mechanics) where general database intuition can be misleading. The rules encode validated, ClickHouse-specific guidance. --- ## Agent Connectivity & Query Workflow Before querying ClickHouse, agents must establish a connection and follow the discovery workflow: 1. `rules/agent-connect-mcp.md` - Connection setup (MCP + CLI), credential discovery, output format selection 2. `rules/agent-discovery-schema.md` - **CRITICAL**: 7-step schema discovery workflow 3. `rules/agent-query-safety.md` - **CRITICAL**: LIMIT, timeouts, progressive exploration **Every agent session should follow this sequence:** 1. **Connect** — establish connection via MCP or CLI (see `agent-connect-mcp`) 2. **Discover** — databases → tables → columns + comments → sort keys → skip indexes → sample → EXPLAIN 3. **Plan** — use sort key and skip index knowledge to write efficient WHERE clauses 4. **Execute** — run queries with LIMIT and timeouts 5. **Recover** — on timeout/memory errors, narrow filters and retry (see `agent-query-safety`) ### Subagent architecture notes If your system dispatches ClickHouse tasks to specialized subagents: - **Schema discovery + query execution**: any model — the steps are procedural - **EXPLAIN analysis + query optimization**: benefits from mid-tier reasoning - **Schema design review against all 28 rules**: benefits from mid-tier reasoning --- ## Review Procedures ### For Schema Reviews (CREATE TABLE, ALTER TABLE) **Read these rule files in order:** 1. `rules/schema-pk-plan-before-creation.md` - ORDER BY is immutable 2. `rules/schema-pk-cardinality-order.md` - Column ordering in keys 3. `rules/schema-pk-prioritize-filters.md` - Filter column inclusion 4. `rules/schema-types-native-types.md` - Proper type selection 5. `rules/schema-types-minimize-bitwidth.md` - Numeric type sizing 6. `rules/schema-types-lowcardinality.md` - LowCardinality usage 7. `rules/schema-types-avoid-nullable.md` - Nullable vs DEFAULT 8. `rules/schema-partition-low-cardinality.md` - Partition count limits 9. `rules/schema-partition-lifecycle.md` - Partitioning purpose **Check for:** - [ ] PRIMARY KEY / ORDER BY column order (low-to-high cardinality) - [ ] Data types match actual data ranges - [ ] LowCardinality applied to appropriate string columns - [ ] Partition key cardinality bounded (100-1,000 values) - [ ] ReplacingMergeTree has version column if used ### For Query Reviews (SELECT, JOIN, aggregations) **Read these rule files:** 1. `rules/query-join-choose-algorithm.md` - Algorithm selection 2. `rules/query-join-filter-before.md` - Pre-join filtering 3. `rules/query-join-use-any.md` - ANY vs regular JOIN 4. `rules/query-index-skipping-indices.md` - Secondary index usage 5. `rules/schema-pk-filter-on-orderby.md` - Filter alignment with ORDER BY **Check for:** - [ ] Filters use ORDER BY prefix columns - [ ] JOINs filter tables before joining (not after) - [ ] Correct JOIN algorithm for table sizes - [ ] Skipping indices for non-ORDER BY filter columns ### For Insert Strategy Reviews (data ingestion, updates, deletes) **Read these rule files:** 1. `rules/insert-batch-size.md` - Batch sizing requirements 2. `rules/insert-mutation-avoid-update.md` - UPDATE alternatives 3. `rules/insert-mutation-avoid-delete.md` - DELETE alternatives 4. `rules/insert-async-small-batches.md` - Async insert usage 5. `rules/insert-optimize-avoid-final.md` - OPTIMIZE TABLE risks **Check for:** - [ ] Batch size 10K-100K rows per INSERT - [ ] No ALTER TABLE UPDATE for frequent changes - [ ] ReplacingMergeTree or CollapsingMergeTree for update patterns - [ ] Async inserts enabled for high-frequency small batches --- ## Output Format Structure your response as follows: ``` ## Rules Checked - `rule-name-1` - Compliant / Violation found - `rule-name-2` - Compliant / Violation found ... ## Findings ### Violations - **`rule-name`**: Description of the issue - Current: [what the code does] - Required: [what it should do] - Fix: [specific correction] ### Compliant - `rule-name`: Brief note on why it's correct ## Recommendations [Prioritized list of changes, citing rules] ``` --- ## Rule Categories by Priority | Priority | Category | Impact | Prefix | Rule Count | |----------|----------|--------|--------|------------| | 1 | Primary Key Selection | CRITICAL | `schema-pk-` | 4 | | 2 | Data Type Selection | CRITICAL | `schema-types-` | 5 | | 3 | JOIN Optimization | CRITICAL | `query-join-` | 5 | | 4 | Insert Batching | CRITICAL | `insert-batch-` | 1 | | 5 | Mutation Avoidance | CRITICAL | `insert-mutation-` | 2 | | 6 | Partitioning Strategy | HIGH | `schema-partition-` | 4 | | 7 | Skipping Indices | HIGH | `query-index-` | 1 | | 8 | Materialized Views | HIGH | `query-mv-` | 2 | | 9 | Async Inserts | HIGH | `insert-async-` | 2 | | 10 | OPTIMIZE Avoidance | HIGH | `insert-optimize-` | 1 | | 11 | JSON Usage | MEDIUM | `schema-json-` | 1 | | 12 | Agent Schema Discovery | CRITICAL | `agent-discovery-` | 1 | | 13 | Agent Query Safety | CRITICAL | `agent-query-` | 1 | | 14 | Agent Connectivity + Formats | HIGH | `agent-connect-` | 1 | --- ## Quick Reference ### Schema Design - Primary Key (CRITICAL) - `schema-pk-plan-before-creation` - Plan ORDER BY before table creation (immutable) - `schema-pk-cardinality-order` - Order columns low-to-high cardinality - `schema-pk-prioritize-filters` - Include frequently filtered columns - `schema-pk-filter-on-orderby` - Query filters must use ORDER BY prefix ### Schema Design - Data Types (CRITICAL) - `schema-types-native-types` - Use native types, not String for everything - `schema-types-minimize-bitwidth` - Use smallest numeric type that fits - `schema-types-lowcardinality` - LowCardinality for <10K unique strings - `schema-types-enum` - Enum for finite value sets with validation - `schema-types-avoid-nullable` - Avoid Nullable; use DEFAULT instead ### Schema Design - Partitioning (HIGH) - `schema-partition-low-cardinality` - Keep partition count 100-1,000 - `schema-partition-lifecycle` - Use partitioning for data lifecycle, not queries - `schema-partition-query-tradeoffs` - Understand partition pruning trade-offs - `schema-partition-start-without` - Consider starting without partitioning ### Schema Design - JSON (MEDIUM) - `schema-json-when-to-use` - JSON for dynamic schemas; typed columns for known ### Query Optimization - JOINs (CRITICAL) - `query-join-choose-algorithm` - Select algorithm based on table sizes - `query-join-use-any` - ANY JOIN when only one match needed - `query-join-filter-before` - Filter tables before joining - `query-join-consider-alternatives` - Dictionaries/denormalization vs JOIN - `query-join-null-handling` - join_use_nulls=0 for default values ### Query Optimization - Indices (HIGH) - `query-index-skipping-indices` - Skipping indices for non-ORDER BY filters ### Query Optimization - Materialized Views (HIGH) - `query-mv-incremental` - Incremental MVs for real-time aggregations - `query-mv-refreshable` - Refreshable MVs for complex joins ### Insert Strategy - Batching (CRITICAL) - `insert-batch-size` - Batch 10K-100K rows per INSERT ### Insert Strategy - Async (HIGH) - `insert-async-small-batches` - Async inserts for high-frequency small batches - `insert-format-native` - Native format for best performance ### Insert Strategy - Mutations (CRITICAL) - `insert-mutation-avoid-update` - ReplacingMergeTree instead of ALTER UPDATE - `insert-mutation-avoid-delete` - Lightweight DELETE or DROP PARTITION ### Insert Strategy - Optimization (HIGH) - `insert-optimize-avoid-final` - Let background merges work ### Agent Integration - Discovery (CRITICAL) - `agent-discovery-schema` - Always discover schema before querying ### Agent Integration - Safety (CRITICAL) - `agent-query-safety` - LIMIT, timeouts, progressive exploration ### Agent Integration - Connectivity + Formats (HIGH) - `agent-connect-mcp` - MCP + CLI setup, credential discovery, output format selection --- ## When to Apply This skill activates when you encounter: - AI agent connecting to ClickHouse (MCP, CLI, HTTP) - Agent workflow design for ClickHouse - Schema discovery or exploration requests - `CREATE TABLE` statements - `ALTER TABLE` modifications - `ORDER BY` or `PRIMARY KEY` discussions - Data type selection questions - Slow query troubleshooting - JOIN optimization requests - Data ingestion pipeline design - Update/delete strategy questions - ReplacingMergeTree or other specialized engine usage - Partitioning strategy decisions --- ## Rule File Structure Each rule file in `rules/` contains: - **YAML frontmatter**: title, impact level, tags - **Brief explanation**: Why this rule matters - **Incorrect example**: Anti-pattern with explanation - **Correct example**: Best practice with explanation - **Additional context**: Trade-offs, when to apply, references --- ## Full Compiled Document For the complete guide with all rules expanded inline: `AGENTS.md` Use `AGENTS.md` when you need to check multiple rules quickly without reading individual files.
Skill source recorded
Skill instructions are recorded. This is not a runtime test, safety guarantee or compatibility certification.
Review before install: Avoid automatic install
License: Apache-2.0
Listed tools are metadata hints, not tested compatibility. Agent prompts are suggested handoffs.
Repository metadata and review signals are advisory. Popularity, source discovery and successful execution are different facts.
Version reported in registry metadata; check source releases before relying on it.
Quality
71/100
Strong
Trust
58/100
This page exposes the same decision, trust, audit, use-case, and install signals through the Registry API, so agents can rank this skill without scraping the UI.
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"minimum_review_before_use": [
"Trust: 66/100 Manual review",
"Audit: 74/100 Needs review",
"Safety: 30/100 Avoid automatic install",
"Review repository, license, install command, and permission surface before production use."
],
"expected_agent_output": {
"selected_skill": "clickhouse-clickhouse-best-practices (clickhouse-best-practices)",
"install_command": "npx skills add ClickHouse/agent-skills --skill clickhouse-best-practices",
"risk_summary": "Needs review; Blocked for auto-install; Review before production",
"verification_result": "Report the smallest successful task, files touched, warnings, and any missing setup."
}
},
"outcome_feedback": {
"endpoint": "https://www.openagentskill.com/api/agent/outcome",
"method": "POST",
"requires_resolve_event_id": true,
"event_id_source": "Use install_receipt.outcome_feedback.event_id or feedback.event_id returned by /api/agent/resolve for the current task.",
"expected_outcomes": [
"success",
"failed",
"not_relevant",
"blocked_by_risk",
"setup_required"
],
"payload_template": {
"event_id": "<install_receipt.outcome_feedback.event_id or feedback.event_id from /api/agent/resolve>",
"skill_slug": "clickhouse-clickhouse-best-practices",
"task": "Use clickhouse-best-practices in an agent workflow",
"agent": "codex",
"outcome": "success",
"install_used": true,
"risk_blocked": false,
"setup_required": false,
"task_success": true,
"output_quality": 4,
"error_type": null,
"human_review_required": false,
"workspace": "sandbox",
"time_to_useful_ms": 120000,
"notes": "Report the smallest successful task, setup friction, files touched, and risk notes."
}
},
"endpoints": {
"web": "https://www.openagentskill.com/skills/clickhouse-clickhouse-best-practices",
"api": "https://www.openagentskill.com/api/agent/skills/clickhouse-clickhouse-best-practices",
"audit": "https://www.openagentskill.com/skills/clickhouse-clickhouse-best-practices/audit",
"eval": "https://www.openagentskill.com/api/agent/evals?slug=clickhouse-clickhouse-best-practices&task=Use%20clickhouse-best-practices%20in%20an%20agent%20workflow&max_risk=medium",
"resolve": "https://www.openagentskill.com/api/agent/resolve?task=Use%20clickhouse-best-practices%20in%20an%20agent%20workflow&agent=codex&max_risk=medium",
"receipt": "https://www.openagentskill.com/api/agent/receipt?task=Use%20clickhouse-best-practices%20in%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text",
"install": "https://www.openagentskill.com/api/skills/clickhouse-clickhouse-best-practices/install",
"manifest": "https://www.openagentskill.com/api/registry/manifest/clickhouse-clickhouse-best-practices"
}
}Listing source
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Audit
74/100
Needs review
Copies are not installs. Installation counts require a reported successful installation; they are not a blanket quality guarantee.