Python Biologist
Python Programming for Biologists
Supply asset profile
Data, BI, and analytics
CSV, SQL, notebooks, dashboards, data pipelines, BI, ETL, and spreadsheet analysis.
Scenario
Data analysis
I need my agent to analyze CSV data, produce insights, and explain trends.
Agent fit
Claude Code + CLI + Codex
Codex, Claude Code, Cursor, CLI, or custom agents.
Install
Ready
npx skills add burkesquires/python_biologist
Maintenance
active
5mo since push
Risk
Needs review
License is unclear
GitHub quality
151
64/100 quality · 74/100 trust
Coverage tags
Review notes
License is unclear · Quality score needs review
Agent adoption scorecard
Trust, audit, and install readiness at a glance
These scores combine public repository metadata, OpenAgentSkill review signals, maintenance freshness, and install readiness. They are a shortlist signal, not a replacement for human review.
Quality
PromisingUseful candidate, but compare it with alternatives before adopting.
Trust
Sandbox onlyUseful candidate with missing or mixed trust signals. Keep it in an isolated workspace until the outcome loop proves task fit.
Audit
Needs reviewInstall readiness, security metadata, maintenance, and adoption risk.
Trust Score v5
Human review before install
Run only in a sandbox and compare close alternatives before using it for real work.
Stars
151 GitHub stars
Repo activity
151 stars, 81 forks
Maintenance
5mo since push
License
Unknown
Install
npx skills add burkesquires/python_biologist
Install safety
standard package or runtime install path
Permission surface
filesystem or document access
Agent outcomes
No agent outcome data yet
Docs
Usable metadata, review docs
Risk summary
Review before production
- License is unclear
- Quality score needs review
- License clarity: Unknown
Install readiness
Install path available
- Install path is available
- Repository evidence is available
- License is unclear
- No Agent Proven outcome evidence yet
Agent-readable metadata
Machine-readable decision data for this skill.
Use this block or the embedded JSON to decide whether an agent should install this skill, choose an alternative, or ask for human review first.
Suited tasks
- Data analysis workflows
- Claude Code teams
- builders willing to evaluate younger projects
- Load tabular data
Suited agents
Install decision
- Command
- npx skills add burkesquires/python_biologist
- Policy
- review
- Human review
- yes
Trust and risk
- Trust
- 66/100
- Audit
- 74/100
- Risk level
- Needs review
Outcome loop
- Endpoint
- /api/agent/outcome
- Event ID
- resolve
- Outcomes
- 5
Install command
npx skills add burkesquires/python_biologistDo not use when
- teams that need a vendor-supported SLA
- high-compliance environments without internal security review
- No OpenAgentSkill engagement data yet
- License is unclear
- Quality score needs review
Agent safety v2
58/100 · Review before install
Usable candidate, but the agent should surface permission and audit notes before installation.
Require human approval before installing into a real workspace.
medium
Network access
Skill likely fetches remote pages, APIs, repositories, or external services.
medium
Filesystem access
Skill may read or write project files, documents, generated artifacts, or local workspace state.
- License is unclear
Install targets
Install this skill in your agent workflow
Copy the registry command or an agent-specific install prompt for Codex, Claude Code, and Cursor.
OpenAgentSkill CLI
Use the registry command when your workflow supports the OpenAgentSkill installer.
$ npx skills add burkesquires/python_biologistAgent resolve plan
Let an agent verify fit before installing.
The Resolve API returns the selected skill, alternatives, safety policy, audit notes, install target, and copy-paste prompt an agent can follow without scraping this page.
Resolve JSON
/api/agent/resolve?task=Use%20Python%20Biologist%20for%20an%20agent%20workflow&agent=codex&max_risk=medium
Resolve text
/api/agent/resolve?task=Use%20Python%20Biologist%20for%20an%20agent%20workflow&agent=codex&max_risk=medium&format=text
Install handoff
/api/skills/burkesquires-python-biologist/install
Agent should check
- Task fit and alternatives from Resolve API.
- Audit score, trust score, and safety policy warnings.
- Install target compatibility for Codex, Claude Code, Cursor, or CLI.
Copy prompt
Task: Use Python Biologist in this workspace.
Resolve first: https://www.openagentskill.com/api/agent/resolve?task=Use%20Python%20Biologist%20for%20an%20agent%20workflow&agent=codex&max_risk=medium
Review install handoff: https://www.openagentskill.com/api/skills/burkesquires-python-biologist/install
Install command: npx skills add burkesquires/python_biologist
Before running it, summarize audit warnings, required permissions, and the fallback skill if install is risky.Agent handoff
Give an agent the install path, not another directory page.
Use the public install endpoint to fetch the command, safety checklist, target prompts, and canonical links for this skill.
Install handoff
/api/skills/burkesquires-python-biologist/install
LLM text format
/api/skills/burkesquires-python-biologist/install?format=text
Find alternatives
/api/skills/search?q=Python%20Biologist&limit=3
Agent prompt
Use Python Biologist for this task. Review https://www.openagentskill.com/api/skills/burkesquires-python-biologist/install, then install with: npx skills add burkesquires/python_biologistRegistry metadata
Agent-readable profile for automatic skill selection.
This page exposes the same decision, trust, audit, use-case, and install signals through the Registry API, so agents can rank this skill without scraping the UI.
Manifest
/api/registry/manifest/burkesquires-python-biologist
LLM text
/api/registry/manifest/burkesquires-python-biologist?format=text
Install alias
/api/registry/install/burkesquires-python-biologist
Recommend
/api/registry/recommend?task=Use%20Python%20Biologist%20in%20an%20agent%20workflow&limit=3
Agent fit
Data analysis
Use-case tags
Platforms
Gnuplot, Data Analysis, Claude Code
Audit report
Needs review · 74/100
Review install readiness, maintenance, trust, quality, and metadata warnings before adding this skill to an agent workflow.
Agent decision cockpit
Fallback candidate for Data analysis
Prototype with this skill first; keep a fallback candidate ready.
Role in stack
Fallback candidate
Primary fit
Data analysis
Trust label
Prototype first
Install path
Command ready
Use when
- Data analysis workflows
- Claude Code teams
- builders willing to evaluate younger projects
Evidence
- recent repository activity
- install command or GitHub repo available
- 64/100 quality profile
Review first
- No OpenAgentSkill engagement data yet
Implementation path
- 1Install it in a sandbox agent and run one Data analysis task end to end.
- 2Compare output quality, latency, and failure behavior against at least one alternative.
- 3Promote it into production only after reviewing repository permissions, license, and maintenance signals.
Trust profile
Sandbox only
Useful candidate with missing or mixed trust signals. Keep it in an isolated workspace until the outcome loop proves task fit.
GitHub adoption
INFO151 GitHub stars
Stars/forks activity
INFO151 stars, 81 forks; issue activity unavailable in current metadata
Recent maintenance
INFO5mo since push
License clarity
CHECKUnknown
Good signals
- AI review approved
- Install path is available
- Repository evidence is available
- Install command has no obvious high-risk pattern
- Outcome loop is ready but needs first real agent run
Review before install
- License is unclear
- Quality score needs review
- License clarity: Unknown
- No real agent outcome reports yet
- Human review required before unattended installation
Recommended action
Run only in a sandbox and compare close alternatives before using it for real work.
Quality profile
Promising candidate for agent workflows
Useful candidate, but compare it with alternatives before adopting.
Workflow fit
Use this skill in these scenarios
Analyze datasets
Data analysis
I need my agent to analyze CSV data, produce insights, and explain trends.
Operate web apps
Browser automation
I need my agent to control a browser, fill forms, and verify web app workflows.
Manage repositories
GitHub automation
I need my agent to triage GitHub issues, review pull requests, and summarize repository changes.
Stack fit
Add it to a complete workflow
Operate and verify web apps
Browser QA agent
A stack for agents that navigate products, fill forms, take screenshots, and verify real user flows across web applications.
Turn skills into distribution
Content growth agent
A stack for turning newly indexed skills into SEO briefs, social drafts, comparison pages, and reusable publishing workflows.
Inspect, patch, and verify code
Coding review agent
A stack for software agents that inspect repositories, review pull requests, generate tests, and turn findings into shippable patches.
Alternative shortlist
Compare before you install
Similar skills in this category, ranked with the same readiness and quality signals.
D3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
Grafana
The open and composable observability and data visualization platform. Visualize metrics, logs, and traces from multiple sources like Prometheus, Loki, Elasticsearch, InfluxDB, Postgres and many more.
Superset
Apache Superset is a Data Visualization and Data Exploration Platform
Echarts
Apache ECharts is a powerful, interactive charting and data visualization library for browser
Overview
Python Programming for Biologists
Imported by the skill-only GitHub discovery pipeline because it matches agent skill, automation, domain workflow, RAG, document-processing, data, finance, security, or developer-tool signals. Protocol-server projects are excluded from automated imports.
Platform Compatibility
Technical Details
- Version
- 1.0.0
- License
- Unknown
- Last Updated
- 6/20/2026
- Published
- 6/20/2026
Frameworks & Tools
Decision snapshot
Fallback candidate
recent repository activity
Audit snapshot
Install review
Install and adoption review
- Security
- 80/100
- Maintenance
- 76/100
- Install
- 92/100
Agent-proven evidence
Agent Proven evidence
Outcome reports after resolve, review, install, and one narrow run.
- Success rate
- —
- Recent failure
- —
- Outcomes
- 0
- Output quality
- —
- Failed
- 0
- Not relevant
- 0
- Installs
- 0
- Risk blocked
- 0
- Setup needed
- 0
- Production
- 0
No agent outcome data yet. The first agent run can report success, setup needs, risk blocks, failure, or not-relevant through /api/agent/outcome.
Install
Add to agent workflow
Free and open source. Review the audit before production use.
Growth loop
Share kit
Scenario-led draft for Python Biologist, ready for a manual X post.
The useful research skills are not search wrappers. They help agents keep sources attached. Python Biologist helps agents turn docs, data, or knowledge bases into grounded work. 151 stars https://www.openagentskill.com/skills/burkesquires-python-biologist?ref=x #AIAgents
Optional reply with install command
Listing + install path for Python Biologist: https://www.openagentskill.com/skills/burkesquires-python-biologist?ref=x Install: npx skills add burkesquires/python_biologist
Listing source
Community indexed
This listing was indexed from public sources and is not marked official until a maintainer claim is approved.
- Creator
- burkesquires
- Indexed by
- OpenAgentSkill community index
Attribution links to the public repository or creator profile. Creators can claim the listing to update ownership signals.
Claim this skillOwner claim
Claim this skill listing
This community indexed listing is attributed to burkesquires but is not marked official yet. Claim it to add a verified owner signal and make future launch, install, and audit updates easier to trust.
README badge
Add this badge to your GitHub README to show the listing, trust score, and install handoff.
[](https://www.openagentskill.com/skills/burkesquires-python-biologist)Author
burkesquires
@burkesquires
Tags
Platform Fit
Health Signals
- GitHub stars
- 151
- Quality score
- 42/100
- Last GitHub push
- Feb 5, 2026
- Framework hints
- 2
- OpenAgentSkill views
- 0
- Install copies
- 0
- Outbound clicks
- 0
Community Signal
Share whether this skill looks useful for your agent workflow. Aggregated feedback improves rankings over time.
Trust & Safety
Sandbox only
- GitHub adoption151 GitHub starsINFO
- Stars/forks activity151 stars, 81 forks; issue activity unavailable in current metadataINFO
- Recent maintenance5mo since pushINFO
- License clarityUnknownCHECK
- README/SKILL.md completenessPublic metadata needs stronger README/SKILL.md contextINFO
- Dependency/runtime riskno major dependency risk hints in public metadataPASS
Related Skills
D3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
113.1K stars · 0 installsGrafana
The open and composable observability and data visualization platform. Visualize metrics, logs, and traces from multiple sources like Prometheus, Loki, Elasticsearch, InfluxDB, Postgres and many more.
74.4K stars · 0 installsSuperset
Apache Superset is a Data Visualization and Data Exploration Platform
73.3K stars · 0 installsEcharts
Apache ECharts is a powerful, interactive charting and data visualization library for browser
66.6K stars · 0 installs